View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_26 (Length: 315)
Name: NF1302_low_26
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 44275332 - 44275497
Alignment:
| Q |
82 |
agttttggcatgtaaactaacttccttcctaatggctactcctgcttgttggtattccctttgaacatgagattttgtgttacctttcttggaacatcaa |
181 |
Q |
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| T |
44275332 |
agttttggcatgtaaactaacttccttcctaatggctactcctgcttgttggtattccctttgaacatgagattttgtgttacctttcttggaacatcaa |
44275431 |
T |
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| Q |
182 |
gtaagggagtacaaagtcgtgactgcttcaaactaagttacatgttgcttttatattcttcttttc |
247 |
Q |
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| T |
44275432 |
gtaagggagtacaaagtcgtgactgcttcaaactaagttacatgttgcttttatattcttcttttc |
44275497 |
T |
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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 8829869 - 8829942
Alignment:
| Q |
237 |
ttcttcttttccttttaaaataggtgaccatattggttgaacgctg-ccctataaactgtaatgttcatatcag |
309 |
Q |
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| T |
8829869 |
ttctttttttccttttaaaataggtgaccatattcgttgaacgctgcccctataagctgtaacgttcatgtcag |
8829942 |
T |
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