View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_3 (Length: 740)
Name: NF1302_low_3
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 67 - 711
Target Start/End: Original strand, 2102071 - 2102720
Alignment:
| Q |
67 |
cacagaagtcaaccatctcctgtatt----tcttttgtaccacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggata |
162 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102071 |
cacagaagtcaaccatctcctgtattaatttcttttgtaccacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggata |
2102170 |
T |
|
| Q |
163 |
ttatttctggttccagcagtacaaagaatgagttgttattccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaa |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102171 |
ttatttctggttccagcagtacaaagaatgagttgttattccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaa |
2102270 |
T |
|
| Q |
263 |
tttgacttcacttgggaacccaactaag-ccagaacaccaaatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaatt |
361 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102271 |
tttgacttcacttgggaacccaactaaggccagaacaccagatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaatt |
2102370 |
T |
|
| Q |
362 |
ataaaatccaatgttttagctaacgccttcatagaagtcaccattaatttagatnnnnnnncagaagcacatgtcattggtattagtattcacctcatgg |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2102371 |
ataaaatccaatgttttagctaacgccttcatagaagtcaccattaatttagataaaaaaacagaagcacatgtcattggtattagtattcacctcatgg |
2102470 |
T |
|
| Q |
462 |
tttgaagaaaatgctatggtatagatggttcatgtaatacttaccctcatctcttcttgattagatgaaacaacaaattggtctgcaccaagaaagctca |
561 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102471 |
tttgaagaaaatgctatgatatagatggttcatgtaatacttgccctcatctcttcttgattagatgaaacaacaaattggtctgcaccaagaaagctca |
2102570 |
T |
|
| Q |
562 |
gcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgaccgaggccaccaagacc |
661 |
Q |
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| T |
2102571 |
gcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgaccgaggccaccaagacc |
2102670 |
T |
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| Q |
662 |
aaccactccaagagacttaccaggttgattcatattatgtcgcatcatgg |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2102671 |
aaccactccaagagacttaccaggttgattcatattatgtcgcatcatgg |
2102720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 67 - 415
Target Start/End: Original strand, 2095648 - 2095994
Alignment:
| Q |
67 |
cacagaagtcaaccatctcctgtatttcttttgtaccacctgcagcacttccggcaacagttcttgatcctgcaaacagatgatgaatgaaggatattat |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
2095648 |
cacagaagtcaaccatctcctgtatttcttttgtaccacctgtaacacttccggcaacagttcttgatcctgcaaacagatga---atggaggatattat |
2095744 |
T |
|
| Q |
167 |
ttctggttccagcagtacaaagaatgagttgttattccaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttg |
266 |
Q |
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||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2095745 |
ttctggttccagcggtacaaagaacgagttgttattacaacaaaacttctatacttcaaatgcaacattacctaaattaaggcttgcagggctgaatttg |
2095844 |
T |
|
| Q |
267 |
acttcacttgggaacccaactaag-ccagaacaccaaatatcttcagaagtgacatgtaaggatcaaatgggtgatcacccgaagccgtgtcaattataa |
365 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2095845 |
acttcacttgggaacccaactaagaccagaacaccagatatcttcagaagtgacatgtaaggatcaaacaggtgatcacccgatgccgtgtcaattataa |
2095944 |
T |
|
| Q |
366 |
aatccaatgttttagctaacgccttcatagaagtcaccattaatttagat |
415 |
Q |
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||||||||| |||||| ||||||| ||||||||||||||| | ||||||| |
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| T |
2095945 |
aatccaatgatttagccaacgcctgcatagaagtcaccatcagtttagat |
2095994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 446 - 711
Target Start/End: Original strand, 2096243 - 2096508
Alignment:
| Q |
446 |
agtattcacctcatggtttgaagaaaatgctatggtatagatggttcatgtaatacttaccctcatctcttcttgattagatgaaacaacaaattggtct |
545 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2096243 |
agtattctcttcatggtttgaagaaaatgctatggtatagatggttcatataatacataccctcatatcttcttgattagatgaaacaacaaattggtct |
2096342 |
T |
|
| Q |
546 |
gcaccaagaaagctcagcgcctcctctttctttgacatactagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttactgccatatgac |
645 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2096343 |
gcaccaagaaggctcagcgcctcctctttctttgacatgctagtgctgaaaaccgttacacgcaaaccaaatgccttcccaaattttaccgccatatgac |
2096442 |
T |
|
| Q |
646 |
cgaggccaccaagaccaaccactccaagagacttaccaggttgattcatattatgtcgcatcatgg |
711 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
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| T |
2096443 |
cgaggccaccaagaccaaccactccaagagacttgccgggttgattcatattatgtcgaatcatgg |
2096508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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