View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_36 (Length: 259)
Name: NF1302_low_36
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_36 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 41291542 - 41291773
Alignment:
| Q |
1 |
taaacttcttattaaatgtcctgctattgttaacatttatcttaaggtaaatggtaactaatgttccaaacattagttaactagacaaatatagtaagaa |
100 |
Q |
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| T |
41291542 |
taaacttcttattaagtgccctgccattgttaacatttatcttaaggtaaatggtaactaatgtttcaaacattagttaactagacaaatatagtaagaa |
41291641 |
T |
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| Q |
101 |
tttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtctatgatataaaacttatc-tttttgtttctttaaccggtgttttggaag |
199 |
Q |
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| T |
41291642 |
tttctt-aaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtctacgatataaaacttatcttttttgtttctttaaccggtgtcttggaag |
41291740 |
T |
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| Q |
200 |
tgcctgttaatgaaaacttacaagagaaaaatg |
232 |
Q |
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| T |
41291741 |
tgtccgttaatgaaaacttacaaaagaaaaatg |
41291773 |
T |
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Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 145
Target Start/End: Original strand, 380813 - 380872
Alignment:
| Q |
85 |
acaaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaat |
145 |
Q |
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| T |
380813 |
acaaatatagtaataatttcttaaaat-ttgtgtaatcaaatatttaaaaatgtagaaaat |
380872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 44438068 - 44437990
Alignment:
| Q |
71 |
cattagttaactagacaaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgt |
150 |
Q |
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| T |
44438068 |
cattagttaaggaaacaagtatagtaagaatttcttggaa-cttgtgtaatcaaatatttaaaagtgtagaaaatgttgt |
44437990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 36232791 - 36232852
Alignment:
| Q |
90 |
tatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtct |
152 |
Q |
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| T |
36232791 |
tataataagaatttcttaaaa-cttgtttaatcaagtatttaaaagtatagaaaatgttgtct |
36232852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 45546736 - 45546800
Alignment:
| Q |
87 |
aaatatagtaagaatttcttaaaaacttgtgtaatcaagtattaaaaaatgtagaaaatattgtct |
152 |
Q |
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| T |
45546736 |
aaatatagtaagaatttcttggaa-cttgcgtaatcagatattgaaaagtgtagaaaatattgtct |
45546800 |
T |
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