View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_38 (Length: 252)
Name: NF1302_low_38
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33512383 - 33512605
Alignment:
| Q |
1 |
tctctcaaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattttaagattgttaccaaaatgtaaacatgctt |
100 |
Q |
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| T |
33512383 |
tctctcaaaggttcaaaacaagggttggaatgttcaatatgtttgtcgaaattcgaagacatagaaattttaagattgttaccaaaatgtaaacatgctt |
33512482 |
T |
|
| Q |
101 |
ttcatattgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcagacataaagtcaacattgaagatcaaacaacctttgcttattc |
200 |
Q |
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| T |
33512483 |
ttcatattgattgtattgatcattggcttgagaaacactcaagttgtcctatttgcagacataaagtcaacattgaagatcaaacaacctttgcttattc |
33512582 |
T |
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| Q |
201 |
aaatagtttaaggatgttggtaa |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
33512583 |
aaatagtttaaggatgttggtaa |
33512605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 15103710 - 15103672
Alignment:
| Q |
70 |
ttaagattgttaccaaaatgtaaacatgcttttcatatt |
108 |
Q |
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||||||||||||||||| ||||| ||||||||||||||| |
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| T |
15103710 |
ttaagattgttaccaaattgtaaccatgcttttcatatt |
15103672 |
T |
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