View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_45 (Length: 217)
Name: NF1302_low_45
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_45 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 4192 - 3998
Alignment:
| Q |
9 |
caacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
108 |
Q |
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| T |
4192 |
caacaaaatacatagaccatactaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgatga |
4093 |
T |
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| Q |
109 |
tcccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaggttct |
204 |
Q |
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| T |
4092 |
t-ccctcaaattagttctagctttcttcttccactccaagcactttgtctcaattcttcttccttttctccttccatcatttccatcacaagttct |
3998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 3687 - 3619
Alignment:
| Q |
127 |
agctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccat |
194 |
Q |
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| T |
3687 |
agctttcttcttccattccaagcacttgtgtctcatttcttttcccttttctcgtttcatcatttccat |
3619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 35774278 - 35774468
Alignment:
| Q |
9 |
caacaaaatacatagaccata--ctaaacttgtatttggaattcaaatagctttattatcaataacctctttgataaacttctggaaattattgtatgat |
106 |
Q |
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| T |
35774278 |
caacaaaatatatagaccatatactagacttgtatttgggactcaaatagctttatgatgaagaacctctttgattaacttctggaaattattgtatgat |
35774377 |
T |
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| Q |
107 |
gatcccctcaaattag------ttctagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcattt |
190 |
Q |
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| T |
35774378 |
gatccacccaaattagtagcttttctagctttcttcttccactccaagcacttgtgtctcatttcttttcccttttctccttccatcattt |
35774468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 35848122 - 35848262
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
162 |
Q |
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| T |
35848122 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
35848221 |
T |
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| Q |
163 |
tcttcttccttttctccttccatcatttccatcacaggttc |
203 |
Q |
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| T |
35848222 |
tcttttcctttttctccttccatcatttccatcacaagttc |
35848262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 35865814 - 35865934
Alignment:
| Q |
91 |
gaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaattcttcttccttttctccttcc |
183 |
Q |
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| T |
35865814 |
gaaattaatgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatttcttttcctttttctccttcc |
35865913 |
T |
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| Q |
184 |
atcatttccatcacaggttct |
204 |
Q |
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| T |
35865914 |
atcatttccatcacaagttct |
35865934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 141 - 1
Alignment:
| Q |
70 |
aacctctttgataaacttctggaaattattgtatgatgatcccctcaaattagt------tctagctttcttcttccactccaagcacttt-gtctcaat |
162 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||||| |||| | |||| |||||| | |
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| T |
141 |
aacctctttgattaacttatggaaattattgtatgatgatcctcccaaattagtagcatctgtagctttcttcttccacaccaaactcttttgtctcatt |
42 |
T |
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| Q |
163 |
tcttcttccttttctccttccatcatttccatcacaggttc |
203 |
Q |
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| T |
41 |
tcttttcctttttctccttccatcatttccatcacaagttc |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcaca |
198 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 551 - 478
Alignment:
| Q |
126 |
tagctttcttcttccactccaagcactt-tgtctcaattcttcttccttttctccttccatcatttccatcaca |
198 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
551 |
tagctttcttcttccattccaagcacttatgtctcatttcttttcccttttctccttccatcatttccatcaca |
478 |
T |
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