View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_6 (Length: 516)
Name: NF1302_low_6
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 36 - 437
Target Start/End: Original strand, 45672817 - 45673212
Alignment:
| Q |
36 |
gagtcatcctttgattttcaatctcttctttgttctttgcactcttgatacgacgacgctttctcctacacgatgctgttactgttgtagcttcttccac |
135 |
Q |
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| T |
45672817 |
gagtcatcctttgattttcaatctcctctttgttctttgcactcttgatacgacgacgctttctcctacacgatgctgttactgt---agcttcctccat |
45672913 |
T |
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| Q |
136 |
ggtggaagaaggaggtgctgtgatagtttgatcaacggtgcagatttcaggagaggaagagtgtgaatattcccattgatgatcccagtttgcatggaga |
235 |
Q |
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| T |
45672914 |
ggtggaagaaggaggtgctgtgatagtttgatcaacggtgcagatttcaggagaggaagagtgtgaatattcccattgatgatcccagtttgcatggaga |
45673013 |
T |
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| Q |
236 |
ttttgttgttcattgttgatgattcctaggagaacattctcttgttcttccgcatccgcatgaagatgatcatagtcattattcaaagagttgaagtaat |
335 |
Q |
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| T |
45673014 |
ttttgttgttcattgttgatgattcctaggagaacattctcttgttct------tccgcatgaagatgatcatagtcattattcaaagagttgaagtaat |
45673107 |
T |
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| Q |
336 |
tgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagcc---attattattaatttgtgactaatctaaaattattgaag |
432 |
Q |
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| T |
45673108 |
tgtctttgtaactatatgtgaatggatcttgttgtgggaaaaccacagtttcaagagccattattattattaatttgtgactaatctaaaattattgaag |
45673207 |
T |
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