View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1302_low_9 (Length: 472)
Name: NF1302_low_9
Description: NF1302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1302_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 22794659 - 22795036
Alignment:
| Q |
1 |
tctagctcgtttataacagcaaccaaccactaagactttgaatttgtattgtgtatagctcgtcagaaagagaaggcaaactcatcagtaaatgagttgg |
100 |
Q |
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| T |
22794659 |
tctagctcgtttataacagcaaccaaccagtaagactttgaatttgtattgtgtatagctcgtcagaaagagaaggcaaactcatcagtaaatgagttgg |
22794758 |
T |
|
| Q |
101 |
tagaggcagtaagcagaagaccaaggtcactcagtgaatcagcaaaccgacctccctttataaaagtgccaacaaaaacagtgcatagtagtgatcatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
22794759 |
tagaggcagtaagcagaagaccaaggtcactcagtgaatcagcaaaccgacctccctttataaaagtgccaacaaaaacagtacatagtagtgatcatgc |
22794858 |
T |
|
| Q |
201 |
aacacaagaacttcaaaaaacaccatccaagtcatcaaggagaagaaaatccgagagtactttgccttcatttcgacgcaaatcacattct---ggagga |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22794859 |
aacacaagaacttcaaaaaacaccatccaagtcatcaaggagaagaaaatccgagagtactttgccttcatttcgacgcaaatcacattctggaggagga |
22794958 |
T |
|
| Q |
298 |
ggagatactcattttaattcaatgcatcccatcactgagacccctgaaaataaaatcaactcgcgtcgccgttctttc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22794959 |
ggagatactcattttaattcaatgcatcccatcactgagacccctgaaaataaaatcaactcgcgtcgccgttctttc |
22795036 |
T |
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