View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13030_high_5 (Length: 466)
Name: NF13030_high_5
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13030_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 20 - 440
Target Start/End: Original strand, 43540285 - 43540690
Alignment:
| Q |
20 |
ctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggtatataatatatgctactacaactcaattagtgacaatattgtcag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
43540285 |
ctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggtata---------------caactcaattagtgacaatattgtcac |
43540369 |
T |
|
| Q |
120 |
taacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaatgataaattaagggaaggag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43540370 |
taacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaatgataaattaagggaaggag |
43540469 |
T |
|
| Q |
220 |
agtttgtgaagaaaaatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtttgtgtatgagattgatgcttttatggatgaatgcca |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43540470 |
agtttgtgaagaaaaatgcaccaaagacatgtgatgttacattgatttacaatggtgaattgtttgtgtatgagattgatgcttttatggatgaatgcca |
43540569 |
T |
|
| Q |
320 |
atcacaaagtaaatatcactcaaaatgcaacttctttcatcagtgtatttgcttttcaggcaagtcaagttaattatggctttctttaaattaatatcat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43540570 |
atcacaaagtaaatatcactcaaaatgcaacttctttcatcagtgtatttgcttttcaggcaagtcaagttaattatggctttctttaaattaatatcat |
43540669 |
T |
|
| Q |
420 |
agcatagcatgtataattcta |
440 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
43540670 |
agcatagcaggtataattcta |
43540690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University