View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13030_high_7 (Length: 395)

Name: NF13030_high_7
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13030_high_7
NF13030_high_7
[»] chr3 (5 HSPs)
chr3 (1-115)||(18201849-18201963)
chr3 (1-72)||(18201969-18202040)
chr3 (249-345)||(9775129-9775225)
chr3 (60-115)||(18201775-18201830)
chr3 (237-321)||(27437939-27438024)
[»] chr6 (6 HSPs)
chr6 (1-110)||(2272105-2272211)
chr6 (250-346)||(14958901-14958998)
chr6 (224-352)||(33596402-33596531)
chr6 (249-321)||(8877850-8877922)
chr6 (1-37)||(2272236-2272272)
chr6 (346-382)||(34551489-34551525)
[»] chr5 (2 HSPs)
chr5 (1-110)||(39343592-39343698)
chr5 (1-37)||(39343723-39343759)
[»] chr1 (9 HSPs)
chr1 (1-110)||(4009436-4009542)
chr1 (237-346)||(21859704-21859814)
chr1 (251-345)||(22916284-22916379)
chr1 (281-345)||(1390393-1390457)
chr1 (1-37)||(4009567-4009603)
chr1 (47-88)||(37907219-37907260)
chr1 (346-382)||(27525466-27525502)
chr1 (48-88)||(37907259-37907299)
chr1 (48-88)||(37907298-37907338)
[»] chr7 (7 HSPs)
chr7 (237-348)||(48629422-48629534)
chr7 (1-110)||(35345044-35345150)
chr7 (1-37)||(35345175-35345211)
chr7 (346-382)||(23109959-23109995)
chr7 (346-382)||(31076612-31076648)
chr7 (346-375)||(47195027-47195056)
chr7 (348-380)||(44083519-44083551)
[»] scaffold0186 (1 HSPs)
scaffold0186 (249-345)||(2723-2820)
[»] chr4 (2 HSPs)
chr4 (237-321)||(4103241-4103326)
chr4 (346-382)||(49349110-49349146)
[»] scaffold0164 (1 HSPs)
scaffold0164 (255-346)||(29930-30021)
[»] scaffold0003 (1 HSPs)
scaffold0003 (255-348)||(110997-111091)
[»] chr2 (4 HSPs)
chr2 (266-346)||(27513751-27513832)
chr2 (346-382)||(6756697-6756733)
chr2 (346-382)||(7126110-7126146)
chr2 (346-382)||(21812648-21812684)
[»] chr8 (3 HSPs)
chr8 (251-345)||(15327849-15327943)
chr8 (251-345)||(15508218-15508312)
chr8 (346-382)||(41012015-41012051)
[»] scaffold0187 (3 HSPs)
scaffold0187 (47-88)||(31817-31858)
scaffold0187 (48-88)||(31739-31779)
scaffold0187 (48-88)||(31778-31818)
[»] scaffold0131 (1 HSPs)
scaffold0131 (255-321)||(10298-10365)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 18201963 - 18201849
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggttcggtttagactgattggaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18201963 tggaagcgatagagatgacggcggagacggaagcaagtgagaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagactgattggaaa 18201864  T
Q  101 aatttgagtgtgaga 115  Q
    |||||||||||||||    
T  18201863 aatttgagtgtgaga 18201849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18202040 - 18201969
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattt 72  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18202040 tggaagcgatagagatgacggtggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattt 18201969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 345
Target Start/End: Complemental strand, 9775225 - 9775129
Alignment:
Q  249 caaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  9775225 caaacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcag-ttttcttgtagtg 9775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 115
Target Start/End: Complemental strand, 18201830 - 18201775
Alignment:
Q  60 gagatgaaaattttgggggttcggtttagactgattggaaaaatttgagtgtgaga 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18201830 gagatgaaaattttgggggttaggtttagactgattggaaaaatttgagtgtgaga 18201775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 27438024 - 27437939
Alignment:
Q  237 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcg 321  Q
    |||||||| |||| ||||| |||||||||||||||||||||||| |||||||| |||  | ||||||| |||||||||||||||||    
T  27438024 cgacggttcaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaaggtaaggatcgcagatgaagtgtcg 27437939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 2272211 - 2272105
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggttcggtttagactgattggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  2272211 tggaagcgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaa 2272115  T
Q  101 aatttgagtg 110  Q
    ||| ||||||    
T  2272114 aatctgagtg 2272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 250 - 346
Target Start/End: Complemental strand, 14958998 - 14958901
Alignment:
Q  250 aaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 346  Q
    |||||| ||||||||| ||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14958998 aaacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtgt 14958901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 352
Target Start/End: Original strand, 33596402 - 33596531
Alignment:
Q  224 caaagaaaaactacgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgt 322  Q
    |||||||||  | |||| ||| ||||||||||| |||||||| ||||||||  | ||||| ||||| |||||| |||| |||||||||||||||||||      
T  33596402 caaagaaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcattttgaggcagttataaggtaggggtcgcagatgaagtgtcac 33596501  T
Q  323 aaaatgcagattttcttgtagtgtatggac 352  Q
    ||  ||| |||||||||||||||| |||||    
T  33596502 aatttgctgattttcttgtagtgtgtggac 33596531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 8877922 - 8877850
Alignment:
Q  249 caaacagtcgcaacaactgttgcaaaaatgcatttgaggccgttatatggtaagggtcgcagatgaagtgtcg 321  Q
    ||||||| |||||||||||||||||||||||||||||||| |||  | || | ||||||||||||||||||||    
T  8877922 caaacagccgcaacaactgttgcaaaaatgcatttgaggcagttgcaaggcatgggtcgcagatgaagtgtcg 8877850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2272272 - 2272236
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaag 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  2272272 tggaagcgatagagatgacggcggagacggaagcaag 2272236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Complemental strand, 34551525 - 34551489
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  34551525 tatggacagacaatctcactcattccatgcttatgct 34551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 39343698 - 39343592
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggttcggtttagactgattggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  39343698 tggaagcgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaa 39343602  T
Q  101 aatttgagtg 110  Q
    ||| ||||||    
T  39343601 aatctgagtg 39343592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39343759 - 39343723
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaag 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39343759 tggaagcgatagagatgacggcggagacggaagcaag 39343723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 4009542 - 4009436
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggttcggtttagactgattggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||    |  || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  4009542 tggaagcgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaggtttagactgattggaaa 4009446  T
Q  101 aatttgagtg 110  Q
    ||| ||||||    
T  4009445 aatctgagtg 4009436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 21859704 - 21859814
Alignment:
Q  237 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattt 335  Q
    |||||||| | | |||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||| ||||||||||||||||| ||||||||| |||    
T  21859704 cgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagtttt 21859803  T
Q  336 tcttgtagtgt 346  Q
    |||||||||||    
T  21859804 tcttgtagtgt 21859814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 22916379 - 22916284
Alignment:
Q  251 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    ||||||||||||||| ||| |||||||||| |||||| | |||||| |||| ||||||| ||||| |||||| ||| ||  |||||||||||||||    
T  22916379 aacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgtcgcaaattgatgattttcttgtagtg 22916284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 1390457 - 1390393
Alignment:
Q  281 tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    |||||||| |||||| | ||||||||||||||||||||||| ||  ||||| |||||||||||||    
T  1390457 tttgaggcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 1390393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4009603 - 4009567
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaag 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  4009603 tggaagcgatagagatgacggcggagacggaagcaag 4009567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 37907219 - 37907260
Alignment:
Q  47 gaggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  37907219 gaggattgagtgggagatgaaaattttgggggttaggtttag 37907260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 27525466 - 27525502
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  27525466 tatggacagacaatctcactcattccatgcttatgct 27525502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 37907259 - 37907299
Alignment:
Q  48 aggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  37907259 aggattgagtgggagatgaaaattttgggggttaggtttag 37907299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 37907298 - 37907338
Alignment:
Q  48 aggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  37907298 aggattgagtgggagatgaaaattttgggggttaggtttag 37907338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 348
Target Start/End: Complemental strand, 48629534 - 48629422
Alignment:
Q  237 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattt 335  Q
    |||||||| | | |||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||    
T  48629534 cgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttt 48629435  T
Q  336 tcttgtagtgtat 348  Q
    |||||||||||||    
T  48629434 tcttgtagtgtat 48629422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35345150 - 35345044
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattttgggggttcggtttagactgattggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||    |  || ||||||||||| |||||||||||||||||||||  ||||||||||||||||||    
T  35345150 tggaagcgatagagatgacggcggagacggaagcaaga---agcgataggattgagtgggagatgaaaattttgggggttaagtttagactgattggaaa 35345054  T
Q  101 aatttgagtg 110  Q
    ||| ||||||    
T  35345053 aatctgagtg 35345044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35345211 - 35345175
Alignment:
Q  1 tggaagcgatagagatgacggcggagacggaagcaag 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  35345211 tggaagcgatagagatgacggcggagacggaagcaag 35345175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 23109959 - 23109995
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  23109959 tatggacagacaatctcactcattccatgcttatgct 23109995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 31076612 - 31076648
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31076612 tatggacagacaatctcactcattccatgcttatgct 31076648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 346 - 375
Target Start/End: Original strand, 47195027 - 47195056
Alignment:
Q  346 tatggacagacaatctcactcattccatgc 375  Q
    ||||||||||||||||||||||||||||||    
T  47195027 tatggacagacaatctcactcattccatgc 47195056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Complemental strand, 44083551 - 44083519
Alignment:
Q  348 tggacagacaatctcactcattccatgcctatg 380  Q
    |||||||||||||||||||||||||||| ||||    
T  44083551 tggacagacaatctcactcattccatgcttatg 44083519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 2723 - 2820
Alignment:
Q  249 caaacagtcgcaacaactgttgcaaaaatgcattt-gaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    ||||||| ||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  2723 caaacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 2820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 4103326 - 4103241
Alignment:
Q  237 cgacggtttacccaaacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcg 321  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||| || |||||||||||||||||||||||||    
T  4103326 cgacggtttaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaaggtaagggtcgcagatgaagtgtcg 4103241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 49349110 - 49349146
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  49349110 tatggacagacaatctcactcattccatgcttatgct 49349146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 29930 - 30021
Alignment:
Q  255 gtcgcaacaactgttgcaaaaatgcatttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 346  Q
    |||||||||||||||||||| ||||| ||||||| |||| | |||||||||||||  ||  |||||| ||||||| |||||| |||||||||    
T  29930 gtcgcaacaactgttgcaaatatgcacttgaggcggttaaaaggtaagggtcgcaattgcggtgtcgcaaaatgctgatttttttgtagtgt 30021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 348
Target Start/End: Complemental strand, 111091 - 110997
Alignment:
Q  255 gtcgcaacaactgttgcaaaaatgcat-ttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgtat 348  Q
    ||||||||||||||||| || |||||  ||||||| |||||| |||||||||||||  || ||||||| ||||||| |||||||||||| |||||    
T  111091 gtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaaatgctgattttcttgtattgtat 110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 27513751 - 27513832
Alignment:
Q  266 tgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtgt 346  Q
    ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||| ||  ||||| ||||||||||||||    
T  27513751 tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgt 27513832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 6756697 - 6756733
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6756697 tatggacagacaatctcactcattccatgcttatgct 6756733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 7126110 - 7126146
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  7126110 tatggacagacaatctcactcattccatgcttatgct 7126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 21812648 - 21812684
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||||||||||||||||||||||||||| ||||||    
T  21812648 tatggacagacaatctcactcattccatgcttatgct 21812684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 15327943 - 15327849
Alignment:
Q  251 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||  ||  ||||| |||||||||||||    
T  15327943 aacagccgcaacaa-tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15327849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 15508312 - 15508218
Alignment:
Q  251 aacagtcgcaacaactgttgcaaaaatgca-tttgaggccgttatatggtaagggtcgcagatgaagtgtcgtaaaatgcagattttcttgtagtg 345  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||  |  |||||||||||||||||||||||  ||  ||||| |||||||||||||    
T  15508312 aacagccgcaacaa-tgttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcagatgaagtgtcacaatttgcagtttttcttgtagtg 15508218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 346 - 382
Target Start/End: Original strand, 41012015 - 41012051
Alignment:
Q  346 tatggacagacaatctcactcattccatgcctatgct 382  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  41012015 tatggatagacaatctcactcattccatgcttatgct 41012051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 31858 - 31817
Alignment:
Q  47 gaggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  31858 gaggattgagtgggagatgaaaattttgggggttaggtttag 31817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 31779 - 31739
Alignment:
Q  48 aggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  31779 aggattgagtgggagatgaaaattttgggggttaggtttag 31739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 31818 - 31778
Alignment:
Q  48 aggattgagtgcgagatgaaaattttgggggttcggtttag 88  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  31818 aggattgagtgggagatgaaaattttgggggttaggtttag 31778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 10365 - 10298
Alignment:
Q  255 gtcgcaacaactgttgcaaaaatgcat-ttgaggccgttatatggtaagggtcgcagatgaagtgtcg 321  Q
    |||||| |||||||||||||  ||||  ||||||| |||||| ||||||||||||| |||||||||||    
T  10365 gtcgcagcaactgttgcaaagttgcacattgaggcagttataaggtaagggtcgcaaatgaagtgtcg 10298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University