View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13030_high_8 (Length: 365)
Name: NF13030_high_8
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13030_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 347
Target Start/End: Original strand, 47076325 - 47076656
Alignment:
| Q |
16 |
atgtactgtattctttgttttattttatccctctattgattctgcaatcttatttcaatatatattgactttggctttcgaaattgggctacgtactcct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076325 |
atgtactgtattctttgttttattttatccctctattgattctgcaatcttatttcaatatatattgactttggctttcgaaattgggctacgtactcct |
47076424 |
T |
|
| Q |
116 |
agacacccaatactaagggttgatatttacattttaaaaatttgacatgtagagaatgtcttgggcatcattttctttgaattacttgttggtgggtcac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076425 |
agacacccaatactaagggttgatatttacattttaaaaatttgacatgtagagaatgtcttgggcatcattttctttgaattacttgttggtgggtcac |
47076524 |
T |
|
| Q |
216 |
cgccgtaaggacaacggaggttgaacttctatgaacatgggatttattttttagtgtttcatttattatgtgcaattgtgtttttcaaatactcatggta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076525 |
cgccgtaaggacaacggaggttgaacttctatgaacatgggatttattttttagtgtttcatttattatgtgcaattgtgtttttcaaatactcatggta |
47076624 |
T |
|
| Q |
316 |
ggacaagtatcaaggttttgacttacggaact |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47076625 |
ggacaagtatcaaggttttgacttacggaact |
47076656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University