View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13030_low_12 (Length: 253)
Name: NF13030_low_12
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13030_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 45130821 - 45131037
Alignment:
| Q |
19 |
ctgatctcaaaagtaagtgaggcggggtaattttatatatattattgagnnnnnnnnnnattgttgtgtgtaaattgggtatcctccatacgcagctgca |
118 |
Q |
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| T |
45130821 |
ctgatctcaagagtaagtgaggcggggtaattttatatatattattgagtttttttt--attgttgtgtgtaaattgggtatcctccatacgcagctgca |
45130918 |
T |
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| Q |
119 |
gagactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagat |
218 |
Q |
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| T |
45130919 |
gagactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgagtgtaaagacaaagat |
45131018 |
T |
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| Q |
219 |
gttggagttatggtctgtg |
237 |
Q |
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| T |
45131019 |
gttggagttatggtttgtg |
45131037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 45114071 - 45114129
Alignment:
| Q |
172 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatg |
230 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatg |
45114129 |
T |
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