View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13030_low_2 (Length: 724)

Name: NF13030_low_2
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13030_low_2
NF13030_low_2
[»] chr6 (12 HSPs)
chr6 (232-498)||(13475630-13475894)
chr6 (232-498)||(14020229-14020480)
chr6 (282-456)||(14108462-14108636)
chr6 (599-706)||(13476130-13476237)
chr6 (21-111)||(14044861-14044951)
chr6 (160-244)||(14044769-14044853)
chr6 (494-555)||(14108390-14108451)
chr6 (151-230)||(14020524-14020607)
chr6 (85-144)||(14020649-14020708)
chr6 (30-89)||(13475482-13475541)
chr6 (156-186)||(13475564-13475594)
chr6 (215-244)||(14044691-14044720)
[»] chr3 (1 HSPs)
chr3 (441-562)||(24786788-24786909)
[»] chr8 (3 HSPs)
chr8 (274-331)||(10507846-10507903)
chr8 (156-208)||(10507760-10507812)
chr8 (274-321)||(8753612-8753659)


Alignment Details
Target: chr6 (Bit Score: 176; Significance: 2e-94; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 232 - 498
Target Start/End: Original strand, 13475630 - 13475894
Alignment:
Q  232 aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 331  Q
    ||||| |||| || |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||    
T  13475630 aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata--gagttacagcagagtaattgcagagaa 13475727  T
Q  332 atacgagaatgataagaataaggaaaattacactcacctcccatgagttctattaaaaggatacagactttaggtaatgaaaatgcgacttctagttcgt 431  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |  ||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  13475728 atacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagactttaggtaatgaaaatgcgacttctagttcgt 13475827  T
Q  432 tacttcgttgtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaa 498  Q
    | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  13475828 ttcttcgttgtctatcattactatcaaaggttcatctaaaactcaagtgcagacttcaggtaatgaa 13475894  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 232 - 498
Target Start/End: Complemental strand, 14020480 - 14020229
Alignment:
Q  232 aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 331  Q
    ||||||| || || ||||||||||||||||||| ||||||| ||||| | ||| |||||||||||||||||  |||||||||           |||||||    
T  14020480 aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata--gagttacag-----------cagagaa 14020394  T
Q  332 atacgagaatgataagaataaggaaaattacactcacctcccatgagttctattaaaaggatacagactttaggtaatgaaaatgcgacttctagttcgt 431  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||| ||||| |||||||||||||| |||||||||||| |    
T  14020393 atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa--atacggacttcaggtaatgaaaatgtgacttctagttcat 14020296  T
Q  432 tacttcgttgtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaa 498  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  14020295 tccttcgttgtctgtcgttactatcaaaggttcatctaaaactcaagtgcatacttcaggtaatgaa 14020229  T

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Target: chr6; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 282 - 456
Target Start/End: Complemental strand, 14108636 - 14108462
Alignment:
Q  282 tgacaattgacaatactgatatagagttacagtagagtaaatgcagagaaatacgagaatgataagaataaggaaaattacactcacctcccatgagttc 381  Q
    |||||||||||||||  || |||||||||||| ||||||| | ||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||    
T  14108636 tgacaattgacaatatcgacatagagttacagcagagtaatttcagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttc 14108537  T
Q  382 tattaaaaggatacagactttaggtaatgaaaatgcgacttctagttcgttacttcgttgtctgtcattactatc 456  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14108536 tattaaaaggatacagacttcaggtaatgaaaatgcgacttctagttcgttacttcgttgtctgtcattactatc 14108462  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 599 - 706
Target Start/End: Original strand, 13476130 - 13476237
Alignment:
Q  599 aagaaagaaaataaaattttcttatctctgtcagcaaaaaatcaagtggtagattatacctgaggaagagagtttgcaactttacatttttcgcactttg 698  Q
    |||||||||||| ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13476130 aagaaagaaaattaaattttcttatccctctcagcaaaaactcaagtggtagattatacctgaggaagagagtttgcaactttacatttttcgcactttg 13476229  T
Q  699 tttgtaat 706  Q
    || |||||    
T  13476230 ttagtaat 13476237  T

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Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 14044951 - 14044861
Alignment:
Q  21 tgtcatatatgttctgattttctttttatccgtacccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt 111  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044951 tgtcatatatgttctgattttctttttatccgtagccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt 14044861  T

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Target: chr6; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
Q  160 aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 244  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044853 aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 14044769  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 494 - 555
Target Start/End: Complemental strand, 14108451 - 14108390
Alignment:
Q  494 atgaacgtaggatgaaacaggctggggtagaatctaccacatcaacatgagaatcgataaag 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14108451 atgaacgtaggatgaaacaggctggggtagaatctaccacatcaacatgagaatcgataaag 14108390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
Q  151 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa 230  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||||||    
T  14020607 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa 14020524  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 14020708 - 14020649
Alignment:
Q  85 tgttccagctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat 144  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||    
T  14020708 tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat 14020649  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 13475482 - 13475541
Alignment:
Q  30 tgttctgattttctttttatccgtacccattgtctgccttttctccattcagttatgttc 89  Q
    ||||||||||||| ||||||||||| || | || | |||||||||||||||||| |||||    
T  13475482 tgttctgattttcattttatccgtagccgtcgttttccttttctccattcagttctgttc 13475541  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 186
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
Q  156 caaaaaatgtatttgtctaacggaatttcag 186  Q
    |||||||||||||||||||||||||||||||    
T  13475564 caaaaaatgtatttgtctaacggaatttcag 13475594  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 244
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
Q  215 tatgttcacatttcaataaaaatttatcta 244  Q
    ||||||||||||||||||||||||||||||    
T  14044720 tatgttcacatttcaataaaaatttatcta 14044691  T

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Target: chr3 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 441 - 562
Target Start/End: Complemental strand, 24786909 - 24786788
Alignment:
Q  441 gtctgtcattactatcaaaggttcatctaaaactcaagtgccgacttcaggtgatgaacgtaggatgaaacaggctggggtagaatctaccacatcaaca 540  Q
    ||||||||||||||||||| |||||| |||||| ||||||  |||| ||||| | |||  ||||| | ||| ||||||||||||| ||||||||||||||    
T  24786909 gtctgtcattactatcaaatgttcatataaaacgcaagtgtagactgcaggtaaagaaaataggagggaacgggctggggtagaacctaccacatcaaca 24786810  T
Q  541 tgagaatcgataaagacagcaa 562  Q
     ||||| |||||||||||||||    
T  24786809 ggagaaccgataaagacagcaa 24786788  T

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Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 274 - 331
Target Start/End: Original strand, 10507846 - 10507903
Alignment:
Q  274 ttagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 331  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  10507846 ttagtttatgacaattgacaatactgatatagacttacagcagagtaattgcagagaa 10507903  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
Q  156 caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa 208  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||||||    
T  10507760 caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa 10507812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 8753659 - 8753612
Alignment:
Q  274 ttagtttatgacaattgacaatactgatatagagttacagtagagtaa 321  Q
    |||||||||||||||||||| || ||||||||| |||||| |||||||    
T  8753659 ttagtttatgacaattgacattagtgatatagacttacagcagagtaa 8753612  T

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