View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13030_low_3 (Length: 583)

Name: NF13030_low_3
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13030_low_3
NF13030_low_3
[»] chr3 (1 HSPs)
chr3 (480-583)||(18202149-18202252)
[»] chr6 (4 HSPs)
chr6 (229-391)||(33103669-33103844)
chr6 (521-583)||(2272381-2272443)
chr6 (480-514)||(2272430-2272464)
chr6 (17-77)||(33103505-33103565)
[»] chr7 (2 HSPs)
chr7 (521-583)||(35345320-35345382)
chr7 (480-514)||(35345369-35345403)
[»] chr5 (2 HSPs)
chr5 (521-583)||(39343868-39343930)
chr5 (480-514)||(39343917-39343951)
[»] chr1 (2 HSPs)
chr1 (521-583)||(4009712-4009774)
chr1 (480-514)||(4009761-4009795)
[»] chr8 (2 HSPs)
chr8 (521-578)||(18290784-18290841)
chr8 (480-514)||(18290763-18290797)
[»] scaffold0521 (2 HSPs)
scaffold0521 (521-578)||(4929-4986)
scaffold0521 (480-514)||(4908-4942)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 480 - 583
Target Start/End: Complemental strand, 18202252 - 18202149
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggagttagggcctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttca 579  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18202252 gagacgaacctatgagaatatcctggttgccggagttagggcctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttca 18202153  T
Q  580 gatc 583  Q
    ||||    
T  18202152 gatc 18202149  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 229 - 391
Target Start/End: Original strand, 33103669 - 33103844
Alignment:
Q  229 attttccctttcccttcaacactaaactagttatatcaagaccaacctcaaatctcaattcaattcagg-------------ccatgtttcacagcaaaa 315  Q
    |||||||||||||||||||| || ||| ||||||||||||||||| ||| ||| |||||| ||||||||             |||||||||||| |||||    
T  33103669 attttccctttcccttcaaccctgaaccagttatatcaagaccaatctctaatttcaattaaattcaggagagtttactgcaccatgtttcacaccaaaa 33103768  T
Q  316 acaagtagccatggtagtaaagtctctactcacccttcaaacacaatctgatgtcgattaacaaaagtttccttgt 391  Q
    ||||||||| |||| ||||||||||||| |||||||||||| ||||||| || |||||  ||||||||| ||||||    
T  33103769 acaagtagcaatggcagtaaagtctctattcacccttcaaatacaatctcatttcgatccacaaaagttcccttgt 33103844  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 2272443 - 2272381
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 583  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2272443 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 2272381  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 2272464 - 2272430
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    |||||||||||||||||||| ||||||||||||||    
T  2272464 gagatgaacctatgagaagaacctcgttgccggag 2272430  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 33103505 - 33103565
Alignment:
Q  17 agttgaaatagcgaatgcaatatgacattcatcactatttcaacttttcataacaacaaaa 77  Q
    ||||||||||||||| |||||| |||||| ||  |||||||||||||  |||||| |||||    
T  33103505 agttgaaatagcgaaagcaataggacatttatagctatttcaactttatataacagcaaaa 33103565  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 35345382 - 35345320
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 583  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35345382 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 35345320  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 35345403 - 35345369
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    |||||||||||||||||||| ||||||||||||||    
T  35345403 gagatgaacctatgagaagaacctcgttgccggag 35345369  T

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Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 39343930 - 39343868
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 583  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39343930 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 39343868  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 39343951 - 39343917
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    |||||||||||||||||||| ||||||||||||||    
T  39343951 gagatgaacctatgagaagaacctcgttgccggag 39343917  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 521 - 583
Target Start/End: Complemental strand, 4009774 - 4009712
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 583  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4009774 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatc 4009712  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 514
Target Start/End: Complemental strand, 4009795 - 4009761
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    |||||||||||||||||||| ||||||||||||||    
T  4009795 gagatgaacctatgagaagaacctcgttgccggag 4009761  T

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Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 521 - 578
Target Start/End: Original strand, 18290784 - 18290841
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttc 578  Q
    ||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  18290784 cctcgttgtcggaggagataaagtggcggctgatacaggaagtgttcgttaaaagttc 18290841  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 514
Target Start/End: Original strand, 18290763 - 18290797
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    ||||||||||||||||||||||||||||| |||||    
T  18290763 gagatgaacctatgagaagatcctcgttgtcggag 18290797  T

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Target: scaffold0521 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 521 - 578
Target Start/End: Original strand, 4929 - 4986
Alignment:
Q  521 cctcgttatcggaggagacgaagtggcggctgatacaggaagtgttcgttaaaagttc 578  Q
    |||||||  |||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  4929 cctcgttgccggaggagacaaagtggcggctgatataggcagtgttcgttaaaagttc 4986  T

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Target: scaffold0521; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 480 - 514
Target Start/End: Original strand, 4908 - 4942
Alignment:
Q  480 gagatgaacctatgagaagatcctcgttgccggag 514  Q
    |||||||||||||||||||||||||||||||||||    
T  4908 gagatgaacctatgagaagatcctcgttgccggag 4942  T

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