View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13030_low_4 (Length: 577)
Name: NF13030_low_4
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13030_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 16 - 540
Target Start/End: Complemental strand, 11062367 - 11061843
Alignment:
| Q |
16 |
gtatcaacccaggtcagtttctcaagaccaattttagaataatgtatttaatgttataaaactaaatacaccaaaaaataatttataaatcattaaccac |
115 |
Q |
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| T |
11062367 |
gtatcaacccaggtcagtttctgaagaccaattttagaataatgtatttaatgttataaaactaaatacaccaaaaaataatttataaatcattaaccac |
11062268 |
T |
|
| Q |
116 |
cgatttgaattgaaaaaatttggtttttcaatgcaagttgatggaaggagaaaagtgtgtctgcaagaatgaaagaaaaattgaaaagctaaatcttttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11062267 |
cgatttgaattgaaaaaatttggtttttcaatgcaagttgatggaaggagaaaagtgtgtctgcaagaatgaaagaataattgaaaagctaaatcttttt |
11062168 |
T |
|
| Q |
216 |
gtttgcttccaccaaaagaaacaaataagcatcatgtaaatgttggcattgagtggatgataacaatttaccattcttgttttcttgcatcagattcatg |
315 |
Q |
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| T |
11062167 |
gtttgcttccaccaaaagaaacaaataagcatcatgtaaatgttggcattgagtggatgataacaatttaccattcttgttttcttgcatcagattcatg |
11062068 |
T |
|
| Q |
316 |
tacaaacacaaaaattgaagactgctacatagtttctggagatgactgtgtggcagtgaagagtggatgggatgagtatggcatacaatttgggtggcca |
415 |
Q |
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| T |
11062067 |
tacaaacacaaaaattgaagactgctacatagtttctggagatgactgtgtggcagtgaagagtggatgggatgagtatggcataaaatttgggtggcca |
11061968 |
T |
|
| Q |
416 |
acaaaacaactagtgatcagaaggttgacatgcatttcaccatcttgtgcaaccatttccttgggaagtgagatgtcaggcggaatccaaatcgtccgag |
515 |
Q |
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| T |
11061967 |
acaaaacaactagtgatcagaaggttaacatgcatttcaccttatagtgcaaccattgccttgggaagtgagatgtcaggcggaatacaagacgtcagag |
11061868 |
T |
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| Q |
516 |
ccgaggcaatcacagcagtcaatac |
540 |
Q |
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| T |
11061867 |
ccgaggacatcacagccgtccatac |
11061843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 396
Target Start/End: Original strand, 41333822 - 41333890
Alignment:
| Q |
328 |
aattgaagactgctacatagtttctggagatgactgtgtggcagtgaagagtggatgggatgagtatgg |
396 |
Q |
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| T |
41333822 |
aattgaggactgttatatagtgtctggggacgactgtgtggccgtgaagagtggttgggatgagtatgg |
41333890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 307 - 495
Target Start/End: Original strand, 29765234 - 29765422
Alignment:
| Q |
307 |
agattcatgtacaaacacaaaaattgaagactgctacatagtttctggagatgactgtgtggcagtgaagagtggatgggatgagtatggcatacaattt |
406 |
Q |
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|||||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
29765234 |
agattcgtgcacaaatacaaaaattgaagactgctacatagtttctggggatgactgtgttgctgtgaagagtggatgggatgagtatggcatcaaattt |
29765333 |
T |
|
| Q |
407 |
gggtggccaacaaaacaactagtgatcagaaggttgacatgcatttcaccatcttgtgcaaccatttccttgggaagtgagatgtcagg |
495 |
Q |
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| T |
29765334 |
ggctggcctacaaaacaactagtaatcagaagactaacatgcatttcaccgttcagtgcaaccattgccttagggagtgagatgtcagg |
29765422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 396
Target Start/End: Complemental strand, 45075281 - 45075191
Alignment:
| Q |
306 |
cagattcatgtacaaacacaaaaattgaagactgctacatagtttctggagatgactgtgtggcagtgaagagtggatgggatgagtatgg |
396 |
Q |
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||||||||||||||||| | |||||||||| ||| ||||||||||| ||||| ||| | ||| | || |||||||||||||||||||| |
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| T |
45075281 |
cagattcatgtacaaacgtcagaattgaagacaactatatagtttctggtgatgattgtattgcaataaaaagtggatgggatgagtatgg |
45075191 |
T |
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