View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13030_low_6 (Length: 454)
Name: NF13030_low_6
Description: NF13030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13030_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 2188354 - 2188789
Alignment:
| Q |
1 |
gtttatagtttacctaaggtggccacatcttcaaatattggtagaaatattaaattgcattgaataaattatcattaatgaaatgttataagtttctacc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2188354 |
gtttatagtttatctaaggtggccacatcttcaaacattggtagaaataccaaattgcattgaataaattatcattaatgaaatgttataagtttctaac |
2188453 |
T |
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| Q |
101 |
ttnnnnnnnntagtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgtttatttaataaacaatgaaggtttttgctttgtgagaaa |
200 |
Q |
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| T |
2188454 |
ttaaaaaaaataatgttaaatgagtgtttgagaattatagatgttgaaatataagggttgtttatttaataaacaatgaaggtttttgctttgtgagaaa |
2188553 |
T |
|
| Q |
201 |
atagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgatttttaaaattattacaaaaacaattgcaaatag |
300 |
Q |
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| T |
2188554 |
atagaaggacatgaattacatttgtaagggtggtaggcatatttttctttatttttaatgatgtgatttttaaaattattacaaaaacaattgcaaatag |
2188653 |
T |
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| Q |
301 |
gatcaaactagtcctctccgactaattagcgagttccaaagcgcttttgttcttggaagatcgatttctgagaatactcttctagcttttgaatatttcc |
400 |
Q |
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| T |
2188654 |
gatcaaactggtcctctccgactaattagcgagttccaaagcgcttttgttcttggaagatcgatttctgagaatgctcttctagcttttgaatatttcc |
2188753 |
T |
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| Q |
401 |
attacatgagaaaaaagaagggtacaaaggggtgtg |
436 |
Q |
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| T |
2188754 |
attacatgagaaaaaagaagggtacaaaggggtgtg |
2188789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 3147729 - 3147688
Alignment:
| Q |
119 |
aatgagtgtttgagaattatagatgttcaaatataagggttg |
160 |
Q |
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| T |
3147729 |
aatgagtgtttgagaattatggatgtgcgaatataagggttg |
3147688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 15634278 - 15634329
Alignment:
| Q |
113 |
gtgttaaatgagtgtttgagaattatagatgttcaaatataagggttgttta |
164 |
Q |
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| T |
15634278 |
gtgttgaatgagtgtttgagaataattgatgttcaaatataagggtggttta |
15634329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 300
Target Start/End: Complemental strand, 43136625 - 43136592
Alignment:
| Q |
267 |
tttttaaaattattacaaaaacaattgcaaatag |
300 |
Q |
| |
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| T |
43136625 |
tttttaaaattattactaaaacaattgcaaatag |
43136592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 14071760 - 14071720
Alignment:
| Q |
261 |
atgtgatttttaaaattattacaaaaacaattgcaaatagg |
301 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
14071760 |
atgtcatttttaaaataattacaaaaacaatttcaaatagg |
14071720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 14381788 - 14381748
Alignment:
| Q |
261 |
atgtgatttttaaaattattacaaaaacaattgcaaatagg |
301 |
Q |
| |
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|||| ||||||||||| ||||||||||||||| |||||||| |
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| T |
14381788 |
atgtcatttttaaaataattacaaaaacaatttcaaatagg |
14381748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 18481985 - 18481938
Alignment:
| Q |
112 |
agtgttaaatgagtgtttgagaattatagatgttcaaatataagggtt |
159 |
Q |
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| T |
18481985 |
agtgttgaatgagtgtttgagaattataggtgtctaaatataagggtt |
18481938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 301
Target Start/End: Original strand, 11599149 - 11599183
Alignment:
| Q |
267 |
tttttaaaattattacaaaaacaattgcaaatagg |
301 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
11599149 |
tttttaaaataattacaaaaacaattgcaaatagg |
11599183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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