View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13031_low_1 (Length: 648)
Name: NF13031_low_1
Description: NF13031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13031_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 42 - 633
Target Start/End: Original strand, 25492263 - 25492855
Alignment:
| Q |
42 |
gttggacataaaccaagcttcgaagagaaaactaaagaaaccaataattaggaagtacaaacctattacgnnnnnnnnn-tctagcctaataaagttagg |
140 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
25492263 |
gttggacataatccaaacttcgaagagaaaactaaagaaaccaataattaggaagttcaaacctattacgaaaaaaaaaatctagcctaataaagttagg |
25492362 |
T |
|
| Q |
141 |
cattagattccctcaagtaaaa-catttagaaaagacccaaaaaaggtttgttagcacaatagtttccatcttgaaatacaa-gagaaacccaagagcga |
238 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
25492363 |
cattggattccctcaagtaaaaacatttagaaaagacccaaaagaggtttgttggctcaatagtttccatcttgaaatacaaagagaaacccgagagcga |
25492462 |
T |
|
| Q |
239 |
agtggatgtaaaataaatgcacttctgccaatcgttccaaaggtgccgagaagagtggcacttcaaccaaatactatgccaactttggctccgagcaatc |
338 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
25492463 |
agaggatgtaaaataaatgcaattctgccaatcgttccaaaggtgccgagaagagtggcacttcaaccaatgactatgccaacttttgttccgagcaatc |
25492562 |
T |
|
| Q |
339 |
ttaatagctaacaaagcagcagtaatctgggcaaagaatacatcttgaatgccaaaataagctgagaaacagcccataacaactttactactatctctaa |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25492563 |
ttaatagctaacaaagcagcagtaatctgggaaaagaatacatcttgaaagccaaaataagctgagaaacagcccataataactttactactatctctaa |
25492662 |
T |
|
| Q |
439 |
aagtagcaccatctcctgattggccaggggatcctttcacaacaccatcggcgttaatttttaccaaacggtaccattgggaatgctaggcaaccttaat |
538 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| || | ||||||| ||||| ||||| ||| |
|
|
| T |
25492663 |
aaatagcaccatctcctgattggccaggggatcctttcaca--accatcactgttaatttttacccaaccataggaatgggaatactaggaaacctgaat |
25492760 |
T |
|
| Q |
539 |
aataatgggagctgcacacaaatgacaagtcacccaaagaagtttaaaagagagaactccttaatagaaggcatatgatcttggagcatgatact |
633 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25492761 |
aataaagggagctgcacgcaaatgacaagtcaggcaaagaagtttaaaagagaaaactcctcaatagaaggcatatgatcttggagcatgatact |
25492855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University