View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13032_high_10 (Length: 319)
Name: NF13032_high_10
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 54970147 - 54970454
Alignment:
| Q |
1 |
ccatgagatttaccgtaggctgcaaattggcctatatactctccaccattatctgtccttaaaacatttcagttttctaccagatgcccgttctacagag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || |
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| T |
54970147 |
ccatgagatttacagtaggctgcaaattggcctatatactctccaccattatctgtccttaaa-catttcagttttctaccagatgcctgttctacatag |
54970245 |
T |
|
| Q |
101 |
gcatggaattctttgaaaacctgaagaacttgatttttcttcttcaatggatacacccatacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
200 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54970246 |
gcatgaaattctttgaaaacatgaagaacttgatctttcgtcttcaatggatacacccatacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
54970345 |
T |
|
| Q |
201 |
gtgagccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54970346 |
gtgagccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
54970445 |
T |
|
| Q |
301 |
tactctgtg |
309 |
Q |
| |
|
||||||||| |
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| T |
54970446 |
tactctgtg |
54970454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 4840613 - 4840920
Alignment:
| Q |
1 |
ccatgagatttaccgtaggctgcaaattggcctatatactctccaccattatctgtccttaaaacatttcagttttctaccagatgcccgttctacagag |
100 |
Q |
| |
|
||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||| |
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| T |
4840613 |
ccatgagatctacaataggctgcaaatgggcctatatactctccaccattatctgtccttaaa-catttcagttttcttccggatgcccgttctacagag |
4840711 |
T |
|
| Q |
101 |
gcatggaattctttgaaaacctgaagaacttgatttttcttcttcaatggatacacccatacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
4840712 |
gcatggaattctttgaaaacatgaagaacttgatctttcgtcttcaatggatatacccacacttttctagagtggtcgtcaatgaaggtaacaaagtatt |
4840811 |
T |
|
| Q |
201 |
gtgagccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
300 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4840812 |
gtgagccaccaagggaccttttatatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
4840911 |
T |
|
| Q |
301 |
tactctgtg |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
4840912 |
tactctgtg |
4840920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 33813900 - 33813593
Alignment:
| Q |
1 |
ccatgagatttaccgtaggctgcaaattggcctatatactctccaccattatctgtccttaaaacatttcagttttctaccagatgcccgttctacagag |
100 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |
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|
| T |
33813900 |
ccatgagatttacagtaggctgcaaatgtgcctatatactctccaccattatctgtccttaga-catttcagttttcttccagatgcccgttctacagag |
33813802 |
T |
|
| Q |
101 |
gcatggaattctttgaaaacctgaagaacttgatttttcttcttcaatggatacacccatacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33813801 |
gcatgaaattctttgaaaacctgaagaacttgatctttcttcttcaatggatacacccacacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
33813702 |
T |
|
| Q |
201 |
gtgagccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||| || |
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|
| T |
33813701 |
gtgaaccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatcgaggatatgctttcttctttttgcatcatccgatctttgaaaaga |
33813602 |
T |
|
| Q |
301 |
tactctgtg |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
33813601 |
tactctgtg |
33813593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 9755245 - 9755552
Alignment:
| Q |
1 |
ccatgagatttaccgtaggctgcaaattggcctatatactctccaccattatctgtccttaaaacatttcagttttctaccagatgcccgttctacagag |
100 |
Q |
| |
|
|||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||| |
|
|
| T |
9755245 |
ccattagatttacagtaggttgcaaatttccctatatactctccaccattatctgtccttaaa-catttcagttttcttctagatgtccgttctacagag |
9755343 |
T |
|
| Q |
101 |
gcatggaattctttgaaaacctgaagaacttgatttttcttcttcaatggatacacccatacttttctagagtgatcgtcaatgaaggtaacaaagtatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9755344 |
gcatggaattctttgaaaacctgaagaacttgatctttcctcttcaatggatacactcacacttttctagagtgatcgtcaatgaagataacaaagtatt |
9755443 |
T |
|
| Q |
201 |
gtgagccaccaagggacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
300 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9755444 |
gtgagccactaagagacctttcagatgtagagcaaacatctgaatgaacaagatctaagatatgctttcttcttcttgcatcatctgatctttgaaagga |
9755543 |
T |
|
| Q |
301 |
tactctgtg |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
9755544 |
tactctgtg |
9755552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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