View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13032_high_12 (Length: 313)
Name: NF13032_high_12
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 43870831 - 43870629
Alignment:
| Q |
6 |
agtgagatgaaggtggtttgcttgataagaaaaagagtacaagaaagttgaatagttacctgtgattcccgcatggaaggagttgagattaacaagataa |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43870831 |
agtgaaatgaaggtggtttgcttgataagaaagagagtacaagaaagttgaatagttacctgtgattcccgcatggaaggagttgagattaacaagataa |
43870732 |
T |
|
| Q |
106 |
gattgcgtcgccattgtctttggtcaccaagacagtaaccagataaggagggaaccttatcgtacattacatgtaatgcaggaattcatttacattctta |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
|
|
| T |
43870731 |
gattgcgtcgccattgtctttggtcaccaagacagtaaccagataaggagggaaccttatcgtacattacatg---tttagaaattcatttacattctta |
43870635 |
T |
|
| Q |
206 |
ttaaag |
211 |
Q |
| |
|
|||||| |
|
|
| T |
43870634 |
ttaaag |
43870629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 269 - 300
Target Start/End: Complemental strand, 43870568 - 43870537
Alignment:
| Q |
269 |
caacaacaacaaaaaatctaatgatttttctg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43870568 |
caacaacaacaaaaaatctaatgatttttctg |
43870537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University