View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_high_3 (Length: 517)
Name: NF13032_high_3
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 36647488 - 36647043
Alignment:
| Q |
1 |
gaactattacacaacattttcttcaaggcacatgttttggctttttatatacactacattggtctgctcatgggtcccctctgaaattaataaccatcca |
100 |
Q |
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| T |
36647488 |
gaactattacacaacattttcttcaaggcacatgttttggctttttatatacactacatttgtctgctcatgggtcccctctgaaattaataaccattca |
36647389 |
T |
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| Q |
101 |
tacatttcatgttaagcttaggaatcatgtcaataaagtccaaaactatataatacagtccaagtctataatattttaacaaaaatgctaagaaaacaca |
200 |
Q |
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| T |
36647388 |
tacatttcatgttaagcttaggaatcatgtcaataaagtccaaaactatataatatagtccaagtctataatattttaacaaaaatgctaagaaaacaca |
36647289 |
T |
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| Q |
201 |
cgcacttcgcagtaaactttaaaattcaatttatatacacttttaatgtcgaaagttttacattatcaacaaatcacaactaatttacttttaatgaatc |
300 |
Q |
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| T |
36647288 |
cgcacttcgcagtaaactttaaaattcaatttatatacacttttaatgtcgaaagttttacattatcaacaaatcacaactaatctatttttaatgagtc |
36647189 |
T |
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| Q |
301 |
tattcgaaagtgtatattagagattatattgctaccgatgtgagccaacatttcaaattaaagatagcgatgtctaacgcgatacaagatatataattac |
400 |
Q |
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| T |
36647188 |
tattcgaaagtgtatattagagattatattgctaaccatgtcagccaacattttaaattgaaggtagcgatatgtaacgcggtacaagatatataattac |
36647089 |
T |
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| Q |
401 |
actttatgaactgagtaatagtatctacgtgtcaacatcttgtgca |
446 |
Q |
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| T |
36647088 |
attttatgaaattattaatagtatctacgtgtcaacatcgtgtgca |
36647043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 505
Target Start/End: Complemental strand, 36647020 - 36646963
Alignment:
| Q |
448 |
ttttgctagcaataacattcctggtagtttaatagtacaaatgtggacaccacagtag |
505 |
Q |
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| T |
36647020 |
ttttgctagcaatatcattcctcatagtttaatagtacaaatgtggaccccacagtag |
36646963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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