View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_1 (Length: 659)
Name: NF13032_low_1
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 307 - 634
Target Start/End: Complemental strand, 11129862 - 11129534
Alignment:
| Q |
307 |
ccatagaaattctgatagaattgtagtactatgaaagtgtgagaaaatcatagacacaaatatgtaatcacaatatcaagtgtatgaaccaactcaatt- |
405 |
Q |
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| T |
11129862 |
ccatagaaattctgatagaattgtagtactatgaaagtgtgagaaaatcatagacacaaatatgtaatcacaatatcaagtgtatgaaccaactcaatta |
11129763 |
T |
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| Q |
406 |
catttgaatctagctagctagcagaaccgaaatagttacaactgacaccaaactaactctagtaaaactcagtaacacaaccctactatactcaagttaa |
505 |
Q |
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| T |
11129762 |
catttgaatctagctagctagcagaaccgaaatagttacaactgacaccaaactaactctagtaaaactcagtaacacaaccctactgtactcaagttaa |
11129663 |
T |
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| Q |
506 |
ttcaacaaaggtcgaatcgttcagatagcaccttatatctacttggaataattattatccaaattttacttagttccagaccgaactctaaattaagaca |
605 |
Q |
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| T |
11129662 |
ttcaacaaaggtcgaatcgttcagatagcaccttatatctacttggaataattattatccaaattttacttagttccagaccgaactctaaattaagaca |
11129563 |
T |
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| Q |
606 |
cacagaatagggtttagaccaacataaca |
634 |
Q |
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| T |
11129562 |
cacagaatagggtttagaccaacataaca |
11129534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 11130167 - 11129928
Alignment:
| Q |
2 |
gtttttcttgtattacaaagcaaaagacatgctacaatccttgttaaagagacaaaaaatacggaaaacacgttaccggtcactacttactagagctagt |
101 |
Q |
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| T |
11130167 |
gtttttcttgtattacaaagcaaaagacatgctacaatccttgttaaagagacaaaaaatacggaaaagacgttaccggttactacttactagagctagt |
11130068 |
T |
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| Q |
102 |
ggagcgaaatctggtctccccattttcaccaagccactctcctgtttccctcagctttttctgcacagtcccttcaaatacttgtcccaagaacaaatcc |
201 |
Q |
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| T |
11130067 |
ggagcgaaatctggtctccccattttcaccaagccactctcctgtttccctcagctttttctgcacagtcccttcaaatacttgtcccaagaacaaatcc |
11129968 |
T |
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| Q |
202 |
atcgtagtcttctttacgtccgaatcgttcttcattcttt |
241 |
Q |
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| T |
11129967 |
atcgtagtcttctttacgtctgaatcgttcttcattcttt |
11129928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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