View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13032_low_10 (Length: 335)

Name: NF13032_low_10
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13032_low_10
NF13032_low_10
[»] chr1 (2 HSPs)
chr1 (93-190)||(18644050-18644147)
chr1 (271-321)||(17309720-17309770)
[»] chr4 (5 HSPs)
chr4 (265-321)||(15039832-15039888)
chr4 (265-321)||(15041561-15041617)
chr4 (265-321)||(15112807-15112863)
chr4 (265-321)||(15114536-15114592)
chr4 (264-317)||(16003643-16003696)
[»] chr6 (2 HSPs)
chr6 (265-321)||(13213937-13213993)
chr6 (265-321)||(34245082-34245138)
[»] chr7 (3 HSPs)
chr7 (265-321)||(10866407-10866463)
chr7 (265-321)||(10868125-10868181)
chr7 (265-321)||(20186246-20186302)
[»] chr5 (1 HSPs)
chr5 (265-321)||(33566692-33566748)
[»] chr3 (2 HSPs)
chr3 (265-321)||(8584534-8584590)
chr3 (269-319)||(19844661-19844711)
[»] chr8 (2 HSPs)
chr8 (264-321)||(22692538-22692593)
chr8 (267-321)||(30187685-30187739)
[»] scaffold0590 (1 HSPs)
scaffold0590 (272-321)||(80-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (272-321)||(3846-3895)


Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 190
Target Start/End: Complemental strand, 18644147 - 18644050
Alignment:
Q  93 caacaaattaaaactattccctgtgtcacactgatatttcacccccataaccttacctaaagactgaacatccgctgccaccacttccgctttaccat 190  Q
    |||||||||||| ||||||   || ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||| || |||||||||||||    
T  18644147 caacaaattaaagctattcaaagtatcacattgatatttcacccccactaccttacctaaagactgaacatccgctgccacaacatccgctttaccat 18644050  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 17309720 - 17309770
Alignment:
Q  271 aaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||| |||| ||  ||||||||||||||||||||||||||||    
T  17309720 aaataataggatcgaagaaatgaagattagcttcataggagaagtatgatt 17309770  T

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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 15039832 - 15039888
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15039832 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 15039888  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 15041561 - 15041617
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15041561 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 15041617  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 15112863 - 15112807
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15112863 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 15112807  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 15114592 - 15114536
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15114592 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 15114536  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 16003696 - 16003643
Alignment:
Q  264 ttatcagaaataataggatcaaagagattgagattagcttcataggagaagtat 317  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  16003696 ttatcagaaataataggatcaaagagattgagattaacttcataggaaaagtat 16003643  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 13213937 - 13213993
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13213937 tatcacaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 13213993  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 34245138 - 34245082
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||||||| || ||||  |||||||||| |||||||||||||||||    
T  34245138 tatcagaaataataggatcgaatagatgtagattagctttataggagaagtatgatt 34245082  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 10866463 - 10866407
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||    
T  10866463 tatcagaaataataggatcaaagagattgagattaacttcataaaagaagtatgatt 10866407  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 10868181 - 10868125
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  10868181 tatcagaaataataggatcaaagagattgagattaacttcagaagagaagtatgatt 10868125  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 20186302 - 20186246
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||    
T  20186302 tatcagaaataataggatcgaaaagattgagattagcctcataggagaagtatgatt 20186246  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 265 - 321
Target Start/End: Original strand, 33566692 - 33566748
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  33566692 tatcagaaataaaaggatcaaagagatgtagattagcttcataggagaagtatgatt 33566748  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 321
Target Start/End: Complemental strand, 8584590 - 8584534
Alignment:
Q  265 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||| ||| || |||||||||||||||||||| || ||||||||||    
T  8584590 tatcagaaataatagtatcgaatagattgagattagcttcataagataagtatgatt 8584534  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 19844661 - 19844711
Alignment:
Q  269 agaaataataggatcaaagagattgagattagcttcataggagaagtatga 319  Q
    ||||||||||||||| || ||||||||||||| ||||||| ||||||||||    
T  19844661 agaaataataggatcgaatagattgagattagtttcatagcagaagtatga 19844711  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 22692593 - 22692538
Alignment:
Q  264 ttatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||  |||| || |||||||||||||||| |||||||||||||||||    
T  22692593 ttatcagaaataat--gatcgaatagattgagattagctttataggagaagtatgatt 22692538  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 30187685 - 30187739
Alignment:
Q  267 tcagaaataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    ||||||||||||||||| |  || |||||||||||||| || |||||||||||||    
T  30187685 tcagaaataataggatcgattaggttgagattagcttcgtaagagaagtatgatt 30187739  T

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Target: scaffold0590 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Complemental strand, 129 - 80
Alignment:
Q  272 aataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||| || ||||  ||||||||||||||||||||||||||||    
T  129 aataataggatcgaatagatgtagattagcttcataggagaagtatgatt 80  T

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Target: scaffold0275 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 3846 - 3895
Alignment:
Q  272 aataataggatcaaagagattgagattagcttcataggagaagtatgatt 321  Q
    |||||||||||| || ||||  ||||||||||||||||||||||||||||    
T  3846 aataataggatcgaatagatgtagattagcttcataggagaagtatgatt 3895  T

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