View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13032_low_16 (Length: 265)

Name: NF13032_low_16
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13032_low_16
NF13032_low_16
[»] scaffold0083 (1 HSPs)
scaffold0083 (64-248)||(51003-51177)
[»] chr3 (9 HSPs)
chr3 (64-240)||(10103584-10103760)
chr3 (64-240)||(10214520-10214696)
chr3 (64-240)||(10076085-10076266)
chr3 (136-240)||(10018570-10018674)
chr3 (136-240)||(10123110-10123214)
chr3 (136-240)||(10179767-10179871)
chr3 (64-131)||(10439062-10439131)
chr3 (64-114)||(10223385-10223437)
chr3 (64-102)||(10018949-10018987)
[»] chr5 (2 HSPs)
chr5 (64-114)||(26793227-26793279)
chr5 (64-114)||(26818743-26818795)
[»] chr2 (2 HSPs)
chr2 (64-133)||(26892373-26892444)
chr2 (64-133)||(26897812-26897883)


Alignment Details
Target: scaffold0083 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 64 - 248
Target Start/End: Original strand, 51003 - 51177
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacacactttctaagaaaatatgatattattgcatgggcccaaaacaaagacatgacacatcgtcag 163  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||    
T  51003 taaatgaaggtttgaatgtaaatgatatttcaaaacacactttctaagaacatgtgatattattgcatgggcccaaaacaaagacatgacacatcatcag 51102  T
Q  164 tcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcctataagtgaattg 248  Q
    ||||||||||||||||||||||||||          ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  51103 tcaaatatagtttcagagaaaaataa----------tgttattatttgaggccacttctttcaattatttcctataaatgaattg 51177  T

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Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 10103760 - 10103584
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacacac--tttctaagaaaatatgatattattgcatgggcccaaaacaaagacatgacacatcgtc 161  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||| || ||||||||||||  ||    
T  10103760 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttctaagaaagtatgatattattgtatgggcccaaaagaa-gacatgacacatactc 10103662  T
Q  162 agtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcctataa 240  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  10103661 agtcaaata-agtttcagagaaaaataatgttgtgaattgttgttatttgtggccacttctttcaattatttcctataa 10103584  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 10214696 - 10214520
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacacac--tttctaagaaaatatgatattattgcatgggcccaaaacaaagacatgacacatcgtc 161  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||| |||||||||||| || ||||||||||||  ||    
T  10214696 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttctaagaaagtatgatattattgtatgggcccaaaagaa-gacatgacacatactc 10214598  T
Q  162 agtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcctataa 240  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||||    
T  10214597 agtcaaata-agtttcagagaaaaataatgttgtgaattgttgttatttgtggccacttctttcaattatttcctataa 10214520  T

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Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 10076266 - 10076085
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacacac--tttct---aagaaaatatgatattattgcatgggcccaaaacaaagacatgacacatc 158  Q
    ||||||||||||||||| ||||||||||||||||||||||  ||| |   || |||||||||||||||||||||| |||||||||||||| ||||||| |    
T  10076266 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttatgggaaaaaaatatgatattattgcatggccccaaaacaaagacttgacacaac 10076167  T
Q  159 gtcagtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcctataa 240  Q
     |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| || |||||    
T  10076166 ctcagtcaaatatagtttccgagaaaaataatgttgtgaattgttattatttgaggccacttcttccaattatgtcatataa 10076085  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 10018674 - 10018570
Alignment:
Q  136 ccaaaacaaagacatgacacatcgtcagtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcc 235  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  10018674 ccaaaacaaagtcatgacacatcctcagtcaaatatagtttcagagaaaaataatgttgtgaattattattatatgaggccacttctttcaattatttcc 10018575  T
Q  236 tataa 240  Q
    |||||    
T  10018574 tataa 10018570  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 10123214 - 10123110
Alignment:
Q  136 ccaaaacaaagacatgacacatcgtcagtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcc 235  Q
    ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  10123214 ccaaaacaaagtcatgacacatcctcagtcaaatattgtttcagagaaaaataatgttgtgaattattattatatgaggccacttctttcaattatttcc 10123115  T
Q  236 tataa 240  Q
    |||||    
T  10123114 tataa 10123110  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 10179871 - 10179767
Alignment:
Q  136 ccaaaacaaagacatgacacatcgtcagtcaaatatagtttcagagaaaaataatgttatgaattgttattatttgacgccacttctttcaattatttcc 235  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||||||  ||||||||||||    
T  10179871 ccaaaacaaagtcataacacatcctcagtcaaatatagtttcagagaaaactaatgttgtgaattattattatttgaggccacttcaatcaattatttcc 10179772  T
Q  236 tataa 240  Q
    |||||    
T  10179771 tataa 10179767  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 10439062 - 10439131
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaa--acacactttctaagaaaatatgatattattgcat 131  Q
    ||||||||||||||||  ||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  10439062 taaatgaaggtttgaacgtaaatgatatttcaaaacacacacttgctaagaaaatatgatattattgcat 10439131  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 10223437 - 10223385
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaac--acactttctaagaaa 114  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  10223437 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttctaagaaa 10223385  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 10018987 - 10018949
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacaca 102  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  10018987 taaatgaaggtttgaacgtaaatgatatttcaaaacaca 10018949  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 26793279 - 26793227
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaac--acactttctaagaaa 114  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  26793279 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttctaagaaa 26793227  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 26818795 - 26818743
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaac--acactttctaagaaa 114  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||||||||    
T  26818795 taaatgaaggtttgaatgtaaatgatatttcaaaacacacactttctaagaaa 26818743  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 26892444 - 26892373
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacac--actttctaagaaaatatgatattattgcatgg 133  Q
    |||| |||||||||||  ||||||| ||||||||||||  |||| ||||||||||||||||| ||| |||||    
T  26892444 taaaagaaggtttgaacgtaaatgacatttcaaaacacagacttgctaagaaaatatgatataattacatgg 26892373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 26897883 - 26897812
Alignment:
Q  64 taaatgaaggtttgaatataaatgatatttcaaaacac--actttctaagaaaatatgatattattgcatgg 133  Q
    |||| |||||||||||  ||||||| ||||||||||||  |||| ||||||||||||||||| ||| |||||    
T  26897883 taaaagaaggtttgaacgtaaatgacatttcaaaacacagacttgctaagaaaatatgatataattacatgg 26897812  T

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