View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_19 (Length: 231)
Name: NF13032_low_19
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 48686687 - 48686895
Alignment:
| Q |
1 |
gatttgacttcatgcatgtaggagtgttcccttctaattaccgggaagtggaactaactaataaaggaatatactgatttcaactttcccagttagaaat |
100 |
Q |
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| T |
48686687 |
gatttgacttcatgcatgtaggagtgttcccttctaattaccgggaagtggaactaactaataaaggaatatactgatttcaactttcccagttagaaat |
48686786 |
T |
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| Q |
101 |
tactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacattttgctatatagtcagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48686787 |
tactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacattttgctatatagtcagtca |
48686886 |
T |
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| Q |
201 |
atagggtta |
209 |
Q |
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||||||||| |
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| T |
48686887 |
atagggtta |
48686895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 85 - 189
Target Start/End: Original strand, 48696480 - 48696584
Alignment:
| Q |
85 |
tttcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaattcattgcatgcagcacatctatcttgaatactgatgacatttt |
184 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||| |||| |||||| ||||| | |||| |
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| T |
48696480 |
tttccctgttagaaattactattaggacaccactaaaggcagtgatttgtcgcaaatccattgcatgcagcacacctatactgaatattgatggcttttt |
48696579 |
T |
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| Q |
185 |
gctat |
189 |
Q |
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||||| |
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| T |
48696580 |
gctat |
48696584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 48699510 - 48699575
Alignment:
| Q |
75 |
tgatttcaactttcccagttagaaattactattagcacaccactaaaggcagtgatttgtcacaaa |
140 |
Q |
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| T |
48699510 |
tgatttccactttcccagttagaacttactattagcacaccactaaaggcagtgatctgtcacaaa |
48699575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 122
Target Start/End: Original strand, 48691028 - 48691067
Alignment:
| Q |
83 |
actttcccagttagaaattactattagcacaccactaaag |
122 |
Q |
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| T |
48691028 |
actttcccagttagaaattactataagcacaccactaaag |
48691067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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