View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_2 (Length: 600)
Name: NF13032_low_2
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 13 - 585
Target Start/End: Complemental strand, 4363438 - 4362866
Alignment:
| Q |
13 |
gacatcatcggaggaaaattcttcctacttctattcctctaaagtctttaaaacgataacaaattgtgtcactttgtcatcttccagggatatcaccact |
112 |
Q |
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| T |
4363438 |
gacatcataggaggaaaattcttcctacttctattcctctaaagtctttaaaacgataacaaattgtgtcactttgtcatcttccagggatatcaccact |
4363339 |
T |
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| Q |
113 |
gcgtttcctagttttattttcaaatcagaagctggaaattgagaagaaaatgttttattgtctatttgaggcaaatgattggattggttattgctgtaaa |
212 |
Q |
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| T |
4363338 |
gcgtttcctagttttattttcaaatcagaagctggaaattgagaagaaaatgttttattgtctatttgaggcaaatgattggattggttattgctgtaaa |
4363239 |
T |
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| Q |
213 |
tggtaacaacattggtaatttgttgacaaacaatcatggtaagcaacattgcatagttcctgcaatcataccctaaagacaccaagtttttatgttttgt |
312 |
Q |
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| T |
4363238 |
tggtaacaacattggtaatttgttgacaaacaatcatggtaagcaacattgcatagttcctgcaatcataccctaaagacaccaagtttttatgttttgt |
4363139 |
T |
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| Q |
313 |
atgtttgaaggaacattttttgaaccaacaaaaatatttgtagcctataattcataggtttgattacatgtttgttcacataaccaatgtttttatgcat |
412 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363138 |
atgtttgaaggaacattttttgaaccaacagaaatatttgtagcctataattcataggtttgattacatgtttgttcacataaccaatgtttttatgcat |
4363039 |
T |
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| Q |
413 |
tttggttccattgtacataaagagtgacgcagtgacatcttcacgtgaatcatcatgaactatttagaccaagtgtatttagtgtattaactttatttaa |
512 |
Q |
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| T |
4363038 |
tttggttccattgtacataaagagtgacgcagtgacatcttcaagtgaatcatcatgaactatttagaccaagtgtatttagtgtattaactttatttaa |
4362939 |
T |
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| Q |
513 |
ttttaaagcatattttgttttttgattccactaaaattaatgttggataattactcacttcaaaggtaaaatt |
585 |
Q |
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| T |
4362938 |
ttttaaagcatattttgttttttgattccactaaaattaatgttggataattattcacttcaaaggtaaaatt |
4362866 |
T |
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