View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_3 (Length: 557)
Name: NF13032_low_3
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Complemental strand, 51825932 - 51825397
Alignment:
| Q |
16 |
aactcaaggtacacgctatctaaccaattttatctctcacattnnnnnnnnnnnt----taatatttaattttaactcttagataatattttgccacatg |
111 |
Q |
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| T |
51825932 |
aactcacggtacacgctatctaaccaattttatctctcacattaaaaaaaaatatattttattattaaattttagctcttagataatattttgtcacatg |
51825833 |
T |
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| Q |
112 |
tcgta----------gcacgataccccatttttctcatcatggttgtttgatttcgctaacctgcgtttatttaggatagtttgttaacttaaacctaag |
201 |
Q |
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| T |
51825832 |
tcgtacatcatccatgcacgataccccatttttctcatcatgtttgtttgatttcgctaacctgcgtttatttaggatagtttgttaacttaaacctaag |
51825733 |
T |
|
| Q |
202 |
tctttgatggtttgaaccgtgtttcaattgttccatatttatctcttctagttgcgattgtttaggttcaacttgagtgattccttaatata-ttttgtc |
300 |
Q |
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| T |
51825732 |
tctttgatggtttgaaccgtgtttcaattgttccatatttatctcttctagttgcgattgtttaggttcaacttgagtgatttcttaatatatttttgtc |
51825633 |
T |
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| Q |
301 |
acactgc-agtttcaccttattcaacttgctggacaacccatggacttatttcccacaaacgcgacaccaaaaaacgttacacctgtggattttttgtct |
399 |
Q |
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| T |
51825632 |
acactgcaagtttcaccttattcaacttgttggacaacccatggacttatttcccacaaacgtgacaccaaaaaacgttacacctgtggattctttgtc- |
51825534 |
T |
|
| Q |
400 |
ccaagtccaaggtatgtttttgtgcttcttcatttaattaatagtgaactcaattaactatttttggtttgccacattgcttgtgtgcaacaaaagattc |
499 |
Q |
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| T |
51825533 |
-----tccaaggtatgtttttgtgcttcttcat----ttaatagtgaactcaattaactatttttggtttgccacattgcttgtgtgcaacaaaagattc |
51825443 |
T |
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| Q |
500 |
aatttcataatgattcacacacaatcttgttcttttattacagaat |
545 |
Q |
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| T |
51825442 |
aatttcataatgattcacacacaatcttgttcttttattacagaat |
51825397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 404
Target Start/End: Complemental strand, 51828470 - 51828404
Alignment:
| Q |
338 |
ccatggacttatttcccacaaacgcgacaccaaaaaacgttacacctgtggattttttgtctccaag |
404 |
Q |
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||||||| |||||||||||||||| ||| || |||||| ||||| || |||||||||| | |||||| |
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| T |
51828470 |
ccatggatttatttcccacaaacgtgaccccgaaaaaccttacaactatggattttttctttccaag |
51828404 |
T |
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