View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_6 (Length: 406)
Name: NF13032_low_6
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 391
Target Start/End: Original strand, 28676969 - 28677324
Alignment:
| Q |
22 |
tttttaattttagaatccttaaaatagtaggacacacattagcatctaatatgttcattcctaaaccctaaaccctaatcatgtatttcaattttttcag |
121 |
Q |
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| T |
28676969 |
tttttaattttagaatccttaaaatagtaggacacacattagcatctaatatgttcattcctaaaccctaaaccctaatcatgt--------tttttcag |
28677060 |
T |
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| Q |
122 |
catctatgatcgccactattgacggtgcaaggtctctcaagatt-gtatttgtattacgatttacgacaccgttaatagtgctcttgccaacaaggattc |
220 |
Q |
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| T |
28677061 |
catctattatcgccactattgacggtgcaaggtctctcaagttttgtatttgtattaggatttacgacaccgttaatagtgctcttgccaacaaggattc |
28677160 |
T |
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| Q |
221 |
catatccttaaggatcaaacagaccgatcttgattttttgtgttcccactaatgaataaatggttatttctgtttctgttcactttaaatatatatgcag |
320 |
Q |
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| T |
28677161 |
catatccttaaggatcaaacagaccgatcttgattttttgtgttcccactaatgaataaatggttatttctgcttctgttcactttaaatata------- |
28677253 |
T |
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| Q |
321 |
tatgctctcttcaattgcgtcttttaccatgtatatattcgagaaaaaacttagggtataacaataattct |
391 |
Q |
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| T |
28677254 |
tatgctctcttcaattgcgtcttttaccatgtatatattcgagaaaaaacttagggtataacaacaattct |
28677324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 28720643 - 28720757
Alignment:
| Q |
199 |
gtgctcttgccaacaaggattccatatccttaaggatcaaa-cagaccgatcttgattttttgtgttcccactaatgaataaatggttatttctgtttct |
297 |
Q |
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|||||||||||||||||||||||| |||||| ||| ||||| ||| ||||||||||||||||||| ||||||||||||||||| || ||||| |||| |
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| T |
28720643 |
gtgctcttgccaacaaggattccacatcctttagggtcaaaacaggttgatcttgattttttgtgttgccactaatgaataaatgattgcttctgcttct |
28720742 |
T |
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| Q |
298 |
gttcactttaaatat |
312 |
Q |
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||||| |||| |||| |
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| T |
28720743 |
gttcaatttatatat |
28720757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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