View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13032_low_9 (Length: 337)
Name: NF13032_low_9
Description: NF13032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13032_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 5374579 - 5374271
Alignment:
| Q |
10 |
ataatactatcccatcttgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacaca |
109 |
Q |
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| T |
5374579 |
ataatactatcccatcttgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacaca |
5374480 |
T |
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| Q |
110 |
gattcgtactcgctggacattatgtgtaacagtatagtatacaatgcttttgagtatgtcagggcacacgaaatcgaaatcatgtgggcggtggtaaaga |
209 |
Q |
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| T |
5374479 |
gattcgtactcgctggacattatgtgtaacagtatagtatacaatgcttttgagtatgtcagggcacatgaaatcgaaatcatgtgggcggtggtaaaga |
5374380 |
T |
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| Q |
210 |
tctagagtgtggagagaagttaaatagtcgcgatgagataaaatcagacaaactgattttgcgaaactgtcgaaagagttaaagactggagaacttaatc |
309 |
Q |
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| T |
5374379 |
tctagagtgtggagagaagttaaatagtcgcgatgagataaaatcagacaaactgattttgcgaaactgtcgaaagagttaaagactggagaacttaatc |
5374280 |
T |
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| Q |
310 |
taagggttg |
318 |
Q |
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||||||||| |
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| T |
5374279 |
taagggttg |
5374271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 5368805 - 5368543
Alignment:
| Q |
27 |
tgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagattcgtactcgctgga |
126 |
Q |
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| T |
5368805 |
tgatgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagactcgtactcgctgga |
5368706 |
T |
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| Q |
127 |
cattatgtgtaacagtatagtatacaatgcttttgagtatgtcagggcacacgaaatcgaaatcatgtgggcggtggtaaagatctagagtgtggagaga |
226 |
Q |
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| T |
5368705 |
cattatatgtaacagtatagtatacaatgcttttgagtatgtcagggcacacgaaatcgaaatcacgtgggcagtggtaaagatctagagtttggagaga |
5368606 |
T |
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| Q |
227 |
agttaaatagtcgcgatgagataaaatcagacaaactgattttgcgaaactgtcgaaagagtt |
289 |
Q |
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| T |
5368605 |
agttaaatcatcgcgaagagataaaatccgagacactgattccacgaaactgttgaaagagtt |
5368543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 150 - 318
Target Start/End: Complemental strand, 5356240 - 5356069
Alignment:
| Q |
150 |
acaatgcttttgagtatgtcagggcacacgaaatcgaaatcatgtg---ggcggtggtaaagatctagagtgtggagagaagttaaatagtcgcgatgag |
246 |
Q |
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| T |
5356240 |
acaatgcttttgaatatgtcagggtccacgaaatcgaaataatgtgtgtggcggttataaagatctagagtgtggagagaagttaaatcatcgcgatgag |
5356141 |
T |
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| Q |
247 |
ataaaatcagacaaactgattttgcgaaactgtcgaaagagttaaagactggagaacttaatctaagggttg |
318 |
Q |
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| T |
5356140 |
ataaaatccgagagactgatttcatgaaactgtcaaaagagtaaaagactgtggaacttaatctaagggttg |
5356069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 5367996 - 5367891
Alignment:
| Q |
30 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagattcgtactcgctggacat |
129 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| ||||| ||||||||| | ||||||||| |
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| T |
5367996 |
tgaatagaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcacaactgacagagattcgtagtagctggacat |
5367897 |
T |
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| Q |
130 |
tatgtg |
135 |
Q |
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|||||| |
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| T |
5367896 |
tatgtg |
5367891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 5362780 - 5362626
Alignment:
| Q |
30 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaatattacaagtgacacagattcgtactcgctggacat |
129 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||||||| |||| ||||| ||||||||| | ||||||||| |
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| T |
5362780 |
tgaatggaaaggtcaagagacgttaaggtttgagatgaaaataagctagactgaagttgttgaatatcacaactgacagagattcgtaatagctggacat |
5362681 |
T |
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| Q |
130 |
tatgtgtaacagtatagtatacaatgcttttgagtatgtcagggcacacgaaatc |
184 |
Q |
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| T |
5362680 |
tatgtgaaatggcgtaatttaccatgctttcgagtatttcagggtccacgaaatc |
5362626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 8400208 - 8400273
Alignment:
| Q |
30 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaata |
95 |
Q |
| |
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|||| |||||||| ||| || |||||||||||||||||||||||| |||| |||| |||||||||| |
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| T |
8400208 |
tgaagagaaaggtgaagagaagttaaagtttgagatgaaaataagaaagatggaaattgttgaata |
8400273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 30054957 - 30055021
Alignment:
| Q |
30 |
tgaatagaaaggtcaagtgacgttaaagtttgagatgaaaataagcaagacggaagttgttgaat |
94 |
Q |
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| T |
30054957 |
tgaatagaaaggtcaagagaagttaaagtttgagatgaaaataagcaagatggaagttggtgaat |
30055021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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