View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13033_high_1 (Length: 394)
Name: NF13033_high_1
Description: NF13033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13033_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 10 - 292
Target Start/End: Original strand, 37333736 - 37334018
Alignment:
| Q |
10 |
attatactttcttgttacgtgttttcagcgatttgtcatccacaatacaatgtcaaaatcaattgaaagctattatcaagaatcaggaagggctggcaga |
109 |
Q |
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| T |
37333736 |
attatactttcttgttacgtgttttcagcgatttgtcatccacaatacaatgtcaaaatcaattgaaagctattatcaagaatcaggaagggctggaaga |
37333835 |
T |
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| Q |
110 |
gacaatcttcctgcagtttgcattgccctataccagaagaaggattttagtagagttgtatgcatgataagaaacggccaaggatataaaaaggagagtt |
209 |
Q |
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| T |
37333836 |
gacaatcttcctgcagtttgcattgccctataccagaagaaggattttagtagagttgtatgcatgataagaaacggccaaggatataaaaaggagagtt |
37333935 |
T |
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| Q |
210 |
ttaagacagcaatggctcaagccaaaaagatgcaacagtactgtgaattaaaggtaagcaaggtcccttacatttcagcaagg |
292 |
Q |
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| T |
37333936 |
ttaagacagcaatggctcaagccaaaaagatgcaacagtactgtgaattaaaggtaagcaaggtcccttacatttcagcaagg |
37334018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 337 - 378
Target Start/End: Original strand, 37334090 - 37334131
Alignment:
| Q |
337 |
ctgaccatttagattcatataattattcgtctatcaattttt |
378 |
Q |
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| T |
37334090 |
ctgaccatttagattcatataattattcgtctatcaattttt |
37334131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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