View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13033_high_1_N (Length: 603)
Name: NF13033_high_1_N
Description: NF13033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13033_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 21 - 575
Target Start/End: Complemental strand, 40566069 - 40565513
Alignment:
| Q |
21 |
catcagcagcaattgttttgagtgcacagccatggctttgctannnnnnncaggttcatcggtatacaaatccttagattttgtttagtatttatttatt |
120 |
Q |
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| T |
40566069 |
catcagcagcaattgttttgagtgcacagccatggctttgctatttttttcaggttcatcggtatacaaatccttagattttgtttagtatttatttatt |
40565970 |
T |
|
| Q |
121 |
ctccttgtaaccttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattata |
220 |
Q |
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| T |
40565969 |
ctccttgtaaccttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattata |
40565870 |
T |
|
| Q |
221 |
atgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtcagaactcagaatgcacacctgtgt |
320 |
Q |
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| T |
40565869 |
atgtaactttagtttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtcagaactcagaatgcacacctgtgt |
40565770 |
T |
|
| Q |
321 |
tagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaatt---actatatagtcatgtttatataatatgtccagtcaaa |
417 |
Q |
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| T |
40565769 |
tagcaaaatgaaattaattaaacattatcaaaagctagcatgcttagagacattgcaattactactatatagtcatgtttatataatatgtccagtcaaa |
40565670 |
T |
|
| Q |
418 |
aatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgttgagtagttgtgattctaaacgtga---atttg |
514 |
Q |
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| T |
40565669 |
aatattgttatatattctgtttttgtcaaaaaccatgtttgtatattatgtataaaaaagaaaccgttgagtagttatgattctaaacgtgaattatttg |
40565570 |
T |
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| Q |
515 |
tacacatatttatattataaatggtctaatccttttgatcgatcatgataatgttatatat |
575 |
Q |
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| T |
40565569 |
tatacatatttatattataaatggtctaatcctttt----gatcatgataatgttatatat |
40565513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 133 - 297
Target Start/End: Complemental strand, 40570650 - 40570490
Alignment:
| Q |
133 |
ttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattataatgtaactttag |
232 |
Q |
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|||| ||||||||| ||||||||| ||| ||||||| | ||||| ||||||||||||||| | ||| | |||||| ||||||| |||||||||||||| |
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| T |
40570650 |
ttaaaaatagaaaaatcaaaatgactgatttttcct--acggaatcgaatgatcaaattaag-atggtct-gtctaatatttattttaatgtaactttag |
40570555 |
T |
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| Q |
233 |
tttttggtaacagtgattgcaatgtctctaatcagttgtttaagttttaaaagtagaataggtca |
297 |
Q |
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| T |
40570554 |
tttttggcaacagtgattgcaacgtttctaactagttgtttaagatttaaaggtagaacaggtca |
40570490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 40595321 - 40595253
Alignment:
| Q |
141 |
agaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaa |
209 |
Q |
| |
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| T |
40595321 |
agaaaagtcaaaatgaatgatttttgttgtacagattggaatgatgaaattaaacatggttttgtctaa |
40595253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 449
Target Start/End: Complemental strand, 40570336 - 40570283
Alignment:
| Q |
397 |
tatataatatgtccagtcaaaaatattg-ttatatattctgtttttgtcaaaaa |
449 |
Q |
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| T |
40570336 |
tatatattatttccagtcaaaaatattgtttatatattatgtttctgtcaaaaa |
40570283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 8490271 - 8490224
Alignment:
| Q |
211 |
atttattataatgtaactttagtttttggtaacagtgattgcaatgtc |
258 |
Q |
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| T |
8490271 |
atttattataatgtaactttagtttttggcaacagtgattgcaatgtc |
8490224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 8490376 - 8490288
Alignment:
| Q |
133 |
ttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggttttgtctaacatttattataatgt |
224 |
Q |
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| T |
8490376 |
ttaaaaatagaaaagtcaaaatgactgatttttcc--tatggaattgaatgatcaaatt-aagatggttttgtctattatttattataatgt |
8490288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 426
Target Start/End: Complemental strand, 8490077 - 8490036
Alignment:
| Q |
385 |
tatagtcatgtttatataatatgtccagtcaaaaatattgtt |
426 |
Q |
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| T |
8490077 |
tatagtcatgtttatatattatgtccagtcaaaaatattgtt |
8490036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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