View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13033_high_3 (Length: 468)
Name: NF13033_high_3
Description: NF13033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13033_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 453
Target Start/End: Complemental strand, 34899975 - 34899524
Alignment:
| Q |
1 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttcttctctcgctatttgatgtcaacaaaagctaa |
34899876 |
T |
|
| Q |
101 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899875 |
attgtgtcttcccctgcgtgtatgcaaccttatagtctcaaaattttccttccattctcaccaaacatgaaaggtatgtatcttccaactacaaaatttt |
34899776 |
T |
|
| Q |
201 |
atgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtacgttacgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34899775 |
atgtgaatttgtgcagatgatatcactgacaatatgataatttggtatctcttgcctatcttattataacatttgcatatgcttgtgtggtac-ttacgc |
34899677 |
T |
|
| Q |
301 |
ataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899676 |
ataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataactaagaacatttttagagacacattttcgatattcaattttctgc |
34899577 |
T |
|
| Q |
401 |
attcagctaccaactaattatttgtaagtcttagcagacacttcttcatagat |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34899576 |
attcagctaccaactaattatttgtaagtcttagcagacacttcttcatagat |
34899524 |
T |
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