View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13033_high_4 (Length: 417)
Name: NF13033_high_4
Description: NF13033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13033_high_4 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 2661175 - 2661000
Alignment:
| Q |
242 |
caaacgcagtaggcaaaaatttatcatcccgattatcattctcatcagattcatcatcattcctatctgaaccattcacaccacgaccagaattaaatcc |
341 |
Q |
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| T |
2661175 |
caaacgcagtaggcaaaaatttatcatcccgattatcattctcatcagattcatcatcattcctatctgaaccattcacaccacgaccagaattaaatcc |
2661076 |
T |
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| Q |
342 |
tagaccagaccccgatacactagccgacccaaaacctaaccctaaaccaggcctatcttcaccatcatcctgctct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2661075 |
tagaccagaccccgatacactagccgacccaaaacctaacccaaaaccaggcctatcttcaccatcatcctgctct |
2661000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 30 - 167
Target Start/End: Complemental strand, 2661390 - 2661253
Alignment:
| Q |
30 |
taaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttccca |
129 |
Q |
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| T |
2661390 |
taaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattccctttgtatgactctcgaatttccca |
2661291 |
T |
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| Q |
130 |
acatccacagacccctcctgacctaaacccatccccgg |
167 |
Q |
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| T |
2661290 |
acatccacagacccctcctgacctaaacccatccccgg |
2661253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 25952117 - 25951995
Alignment:
| Q |
34 |
ataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttcccaacat |
133 |
Q |
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| T |
25952117 |
ataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgt---tataactcttgaatttcccaacat |
25952021 |
T |
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| Q |
134 |
ccacagacccctcctgacctaaaccc |
159 |
Q |
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| || || ||||||||||||| |||| |
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| T |
25952020 |
caactgatccctcctgacctagaccc |
25951995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 25945521 - 25945404
Alignment:
| Q |
34 |
ataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttcccaacat |
133 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||| || ||| | |||| ||||||||||||| |
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| T |
25945521 |
ataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgtt-gta--attctccaatttcccaacat |
25945425 |
T |
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| Q |
134 |
ccacagacccctcctgaccta |
154 |
Q |
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|||| || |||| ||||||| |
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| T |
25945424 |
ccactgattcctcgtgaccta |
25945404 |
T |
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