View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13033_high_5 (Length: 396)
Name: NF13033_high_5
Description: NF13033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13033_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 49018853 - 49019017
Alignment:
| Q |
24 |
atgcatgagtgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
123 |
Q |
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| T |
49018853 |
atgcatgagtgattttggaactgtttgtgtgttgtgttggtgatcagaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
49018952 |
T |
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| Q |
124 |
aagggattaggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
188 |
Q |
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| T |
49018953 |
aagggattaggaaaggtacttgcttattcattttcttcttccatttttttgattatcaatggtga |
49019017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 49019059 - 49019210
Alignment:
| Q |
231 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
330 |
Q |
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| T |
49019059 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
49019158 |
T |
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| Q |
331 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
384 |
Q |
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| T |
49019159 |
tctgaagttt--gttttacatctgggttggaattatttattgaatttgatgatg |
49019210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 33 - 188
Target Start/End: Original strand, 8344964 - 8345119
Alignment:
| Q |
33 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
132 |
Q |
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| T |
8344964 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
8345063 |
T |
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| Q |
133 |
ggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
8345064 |
ggaaaggtacttgcttattcattttcttcttccattttcttgattatcaatggtga |
8345119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 33 - 188
Target Start/End: Complemental strand, 42824677 - 42824522
Alignment:
| Q |
33 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
132 |
Q |
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| T |
42824677 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
42824578 |
T |
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| Q |
133 |
ggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
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| T |
42824577 |
ggaaaggtacttgcttattcattttcttcttccattttcttgattatcaatggtga |
42824522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 231 - 384
Target Start/End: Original strand, 8345161 - 8345314
Alignment:
| Q |
231 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
330 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
8345161 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
8345260 |
T |
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| Q |
331 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
384 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8345261 |
tctgaagtttaaattttatatctggtttggaattatttattgaatttgatgatg |
8345314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 42824453 - 42824300
Alignment:
| Q |
231 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
330 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
42824453 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
42824354 |
T |
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| Q |
331 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
384 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42824353 |
tctgaagtttaaattttatatctggtttggaattatttattgaatttgatgatg |
42824300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 50861266 - 50861337
Alignment:
| Q |
236 |
gaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
307 |
Q |
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|||||||||||| |||||||| |||||||||||| |||||||||||||| ||| |||||||||||| ||||| |
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| T |
50861266 |
gaaaattgatgttgggatttcgtcgaattcaactactggtgaattgattggtggaaatagagaatgccaggt |
50861337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 39073819 - 39073745
Alignment:
| Q |
233 |
caggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
307 |
Q |
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||||||||||||||| |||||| || ||||| |||| ||||||||||||| || |||||||||||||||||| |
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| T |
39073819 |
caggaaaattgatgtttggattttgtcaaattcgacttttggtgaattgattgatggaaatagagaatgtcaggt |
39073745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 36588170 - 36588096
Alignment:
| Q |
233 |
caggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
307 |
Q |
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||||||||||||| | |||||||| || ||||| |||||||||||||||||| | | | ||||||| |||||||| |
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| T |
36588170 |
caggaaaattgatcttgggatttcgtcaaattcgacttctggtgaattgattggcggatatagagattgtcaggt |
36588096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 30331035 - 30331070
Alignment:
| Q |
349 |
tatctgggttggaattatttattgaatttgatgatg |
384 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
30331035 |
tatctgggtcggaattatttattgaatttgatgatg |
30331070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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