View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_high_11 (Length: 396)
Name: NF13034_high_11
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Complemental strand, 37259 - 36895
Alignment:
| Q |
12 |
atgaatatgtgcaagtgcaagcagatgcataccaacttttactaccattttaactagacaaaagatgcaaataaagcaatgtgtgtcataactatatgca |
111 |
Q |
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| T |
37259 |
atgaatatgtgcaagtgcaagcagatgcataccaagttttactaccattttaactagacaaaagatgcaaataaagaaatgtgtgtcataactatatgca |
37160 |
T |
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| Q |
112 |
ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc |
211 |
Q |
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| T |
37159 |
ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc |
37060 |
T |
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| Q |
212 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
311 |
Q |
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| T |
37059 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
36960 |
T |
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| Q |
312 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaac |
376 |
Q |
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| T |
36959 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaac |
36895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 375
Target Start/End: Original strand, 8675265 - 8675428
Alignment:
| Q |
212 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
311 |
Q |
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| T |
8675265 |
atttcttcttctgttaggctgtttttcgaatgagggagagtctttgcatttggctgcttttcaagctccacagcccaactataaattaccatgccgacaa |
8675364 |
T |
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| Q |
312 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaa |
375 |
Q |
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| T |
8675365 |
ctgcaagaaccattcccatgatgttcttgaaagtgagctctgaatcgaataacagccaccccaa |
8675428 |
T |
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