View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_high_13 (Length: 385)
Name: NF13034_high_13
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 370
Target Start/End: Original strand, 5720432 - 5720789
Alignment:
| Q |
12 |
cacagatatcaatgtgatcgatgattgaaaagtgtatgnnnnnnnaccaagtcttccgaaaaacaaatgttccttagaaggataattgatcccagtttct |
111 |
Q |
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| T |
5720432 |
cacagatgtcaatgtgatcgatgattgaaaagtgtatgtttttt-accaagtcttccgaaaaacaaatgttccttagaaggataattgatcccagtttct |
5720530 |
T |
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| Q |
112 |
taactcggtcttgatttgtgcttatattcattgtattaagaaaggaagttttggtttctaactttcttttaaaaggataagttactagacaaaaatacat |
211 |
Q |
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| T |
5720531 |
taactcggtcttgatttgtgcttatattcattgtattaagaaaggaagttttggtttctaactttcttttaaaaggataagttactagacaaaaatacat |
5720630 |
T |
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| Q |
212 |
aatggatagaattcaggaactttggcacaatattaggcaactctgactttggaaatcaacatccattannnnnnnaataataaagatgcattttacatat |
311 |
Q |
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| T |
5720631 |
aatggatagaattcaggaactttagcacaatattaggcaactctgactttggaaatcaacatccattatttttttaataataaagatgcattttacatat |
5720730 |
T |
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| Q |
312 |
agtttgaagcttattataattgggatacttttgaggtctcttgatcacttgatgattac |
370 |
Q |
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| T |
5720731 |
agtttgaagcttattataattgggatacttttgaggtctcttgatcacttgatgattac |
5720789 |
T |
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