View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_high_16 (Length: 326)
Name: NF13034_high_16
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 55156546 - 55156653
Alignment:
| Q |
85 |
tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt |
184 |
Q |
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| T |
55156546 |
tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt |
55156645 |
T |
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| Q |
185 |
gatacaat |
192 |
Q |
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| T |
55156646 |
gatacaat |
55156653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 54573279 - 54573386
Alignment:
| Q |
85 |
tggagtcaatgggaagaggataatctaaggaccggaattaaactgtatgtacttgttttaaccaatcaagttactattatattttgttctgtatttcatt |
184 |
Q |
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| T |
54573279 |
tggagtcaatgggaagtggataatctaaagaccggaattgaagtgtatgtacttgttttaaccaatcaagttactataatattttgttgtgtatttcatt |
54573378 |
T |
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| Q |
185 |
gatacaat |
192 |
Q |
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| T |
54573379 |
gatacaat |
54573386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 54573205 - 54573244
Alignment:
| Q |
11 |
cagagacgaagaagctttctccattgaaggagtatgaacc |
50 |
Q |
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| T |
54573205 |
cagagacgaagaagctttctccattgaaggagtatgaacc |
54573244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 55156472 - 55156511
Alignment:
| Q |
11 |
cagagacgaagaagctttctccattgaaggagtatgaacc |
50 |
Q |
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| T |
55156472 |
cagagacgaagaagctttctccattgaaggagtatgaacc |
55156511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 55156740 - 55156769
Alignment:
| Q |
279 |
gatagtgtgtgaaattctggtatttttagt |
308 |
Q |
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| T |
55156740 |
gatagtgtgtgaaattctggtatttttagt |
55156769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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