View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_high_17 (Length: 320)
Name: NF13034_high_17
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_17 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 16657 - 16366
Alignment:
| Q |
17 |
aaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaatt |
116 |
Q |
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| T |
16657 |
aaatatatggattatatggcacacgtactcaacaataacaattgttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaatt |
16558 |
T |
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| Q |
117 |
aaataaaagaaagaaaagggacgtagcagcagttttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgc |
216 |
Q |
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| T |
16557 |
aaataaaagaaagaaaagggacgtagcagcaactttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgc |
16458 |
T |
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| Q |
217 |
agcgatataatataagaagtaataacaattggaattgaataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
308 |
Q |
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| T |
16457 |
agcgatataatataataagtaataacaattggaattgaataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 11177327 - 11177600
Alignment:
| Q |
17 |
aaatatatggattatatggcacacgtactcagcaataacaattgttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
11177327 |
aaatatatggattatatggcacacgtactcagcaataacaattgttatatactcagcccagcaac------------------aacaattcaatttaatt |
11177408 |
T |
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| Q |
117 |
aaataaaagaaagaaaagggacgtagcagcagttttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgc |
216 |
Q |
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| T |
11177409 |
aaataaaagaaagaaaagggacgtagcagcagctttgaaaataaagggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgc |
11177508 |
T |
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| Q |
217 |
agcgatataatataagaagtaataacaattggaattgaataggaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177509 |
agcgatataatataataagtaataacaattggaattgagtaagaaagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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