View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_high_18 (Length: 311)
Name: NF13034_high_18
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_18 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 52948281 - 52947980
Alignment:
| Q |
12 |
acatcatcaccaacaacatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcat |
111 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
52948281 |
acataatcaccaacaatatcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccaccataaatgatacttaaggtgatcat |
52948182 |
T |
|
| Q |
112 |
cataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccatta--actacgtgttcttgacccccagtgtaatac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52948181 |
cataacctaactcttttagtataccagtcgcttcgaagtaacaccacctatccctatcaatcccattactactacgtgttcttgacccccagtgtaatac |
52948082 |
T |
|
| Q |
210 |
aaaatgtagtccctaacaaattcacccccttggtgaaatacaactgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttca |
309 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52948081 |
aaaatatagtccgtaacaaattcacccccatggtgaaatacaattgacacactcatccctgtcaaattttagaaacataaactttgttaataaaccttca |
52947982 |
T |
|
| Q |
310 |
tc |
311 |
Q |
| |
|
|| |
|
|
| T |
52947981 |
tc |
52947980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 31810865 - 31810722
Alignment:
| Q |
29 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
128 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
|
|
| T |
31810865 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
31810766 |
T |
|
| Q |
129 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
172 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| ||||||| |
|
|
| T |
31810765 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
31810722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 7797623 - 7797472
Alignment:
| Q |
29 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
128 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
|
|
| T |
7797623 |
atcagtgtcattgtcatctataatccttaaatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcaaaatatcctaaatctttc |
7797524 |
T |
|
| Q |
129 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
180 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| |||||||| |||||| |
|
|
| T |
7797523 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
7797472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 30320348 - 30320491
Alignment:
| Q |
29 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
128 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
|
|
| T |
30320348 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
30320447 |
T |
|
| Q |
129 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
172 |
Q |
| |
|
| ||| ||||||||||||||||| |||||| | ||| ||||||| |
|
|
| T |
30320448 |
aatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
30320491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 19393617 - 19393467
Alignment:
| Q |
29 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
128 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| |||| || ||||||| |||| | |||||||||||||||||||| ||||| ||||| |
|
|
| T |
19393617 |
atcagtgtcattgtcatctataatccttacataattgtcatcctcaacaatataccaccataacct-tacttaaggtgatcatcatatcctaaatctttc |
19393519 |
T |
|
| Q |
129 |
agtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
180 |
Q |
| |
|
| ||| | ||||||||||||||| |||||| | ||| |||||||| |||||| |
|
|
| T |
19393518 |
aatatcctagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
19393467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 22055210 - 22055067
Alignment:
| Q |
29 |
atcagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactctttt |
128 |
Q |
| |
|
|||||||||||| ||||| | ||||||| || || ||||| ||||||| ||||||| |||| | |||||||||||||||| ||| ||||| ||||| |
|
|
| T |
22055210 |
atcagtgtcattgtcatctataatccttacatacttgtcatcctcaataatataccaccataacctatacttaaggtgatcagaatatcctaaatctttc |
22055111 |
T |
|
| Q |
129 |
agtataccagtagcttcaaagtaacaccacctatccctatcaat |
172 |
Q |
| |
|
| ||| ||||||||||||||||| || ||| | ||| ||||||| |
|
|
| T |
22055110 |
aatatcccagtagcttcaaagtagcaacacttgtccttatcaat |
22055067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 28430160 - 28430291
Alignment:
| Q |
31 |
cagtgtcattatcatcaacaatccttttgtatttatcatcttcaataacataccacaataaacgatacttaaggtgatcatcataacctaactcttttag |
130 |
Q |
| |
|
|||||||||| ||||||| |||||| || || || || ||| ||| ||||||| |||| ||||||||||| ||||||||||| || |||| |||| |
|
|
| T |
28430160 |
cagtgtcattgtcatcaataatcctaacatacttgtcctcctcattaatataccaccataatcgatacttaagatgatcatcatatccaaactgctttaa |
28430259 |
T |
|
| Q |
131 |
tataccagtagcttcaaagtaacaccacctat |
162 |
Q |
| |
|
|||||||| |||||||| || | |||||||| |
|
|
| T |
28430260 |
aataccagtggcttcaaaatagctccacctat |
28430291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University