View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_high_19 (Length: 279)
Name: NF13034_high_19
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_19 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 181620 - 181354
Alignment:
| Q |
13 |
aatttgatggttcaccggtttatattcggtagcgctaaagtaggttgatatatattaatatatttcttatgctagttagtcaggtaagaaaaaagcaaga |
112 |
Q |
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| T |
181620 |
aatttgatggttcaccggtttatactcggtagcgctaaagtaggttgatatatattaatatatttcttatgctagttagtcaggtaagaaaaaagcaaga |
181521 |
T |
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| Q |
113 |
agcaattagagttttagcatcaaaagaaaataggagtcaacacaagagtgctatgatatcaagcataagcatgcatgnnnnnnnaagcataatccagtgc |
212 |
Q |
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| T |
181520 |
agcaattagagttttagcatcaaaagaaaataggagtcaacacaagagtgctatgatatcaagaataagcatgcatgtttttttaagcataatccagtgc |
181421 |
T |
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| Q |
213 |
tagtgaacaagtaaaaacagccgtaaacacagattaaggcacatcatcaccatcattacctttcttc |
279 |
Q |
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| T |
181420 |
tagtgaacaagtaaaaacagccgtaaacacagattaaggcacatcatcaccatcattacctttcttc |
181354 |
T |
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Target: scaffold0042 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 32752 - 32797
Alignment:
| Q |
87 |
gttagtcaggtaagaaaaaagcaagaagcaattagagttttagcat |
132 |
Q |
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| T |
32752 |
gttagtcaggttcgaaaaaagcaagaagcaattagactttaagcat |
32797 |
T |
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