View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_high_20 (Length: 268)
Name: NF13034_high_20
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 31809061 - 31808974
Alignment:
| Q |
164 |
ggtatcataatcccttttttatatccattctttgtttggataaattttcagttattcacggaagttcagtaacacaccatgttatatt |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31809061 |
ggtatcataatcccttttttatatccattctttgtttggataaattttcagttattcacggaagttcagtaacacaccatgttatatt |
31808974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 31809213 - 31809134
Alignment:
| Q |
11 |
cagagaaatcataggagagaaagtgtaaagaaaatcaatgcttttaatttttaatgaggtcatctttttctgtcacacac |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31809213 |
cagagaaatcataggagagaaagtgtaaagaaaatcaatgcttttaatttttaatgaggtcatctttttctgtcacacac |
31809134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University