View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_1 (Length: 719)
Name: NF13034_low_1
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 576; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 20 - 708
Target Start/End: Original strand, 35350647 - 35351336
Alignment:
| Q |
20 |
taaatatgaatttagttcttgtaattataacannnnnnnggttttagtctcgataagttttttgtttgggttcagtcactgcaaattcagaaattgttgc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35350647 |
taaatatgaatttagttcttgtaattataacatttttttggttttagtctcgataagttttttgtttgggttcagtcactgcaaattcagagattgttgc |
35350746 |
T |
|
| Q |
120 |
ttccctgacatcaacatattgggcaatgtggcatgattttattgagctatgcatgccatcaaggactaaaagtaacaattttttaacttgcaggcgtgaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35350747 |
ttccctgacatcaacatattgggcaatgtggcatgattttattgagctatgtatgctgtcaaggactaaaagtaacaattttttaacttgcaggcgtgaa |
35350846 |
T |
|
| Q |
220 |
tctaaacagaaaaagttatagggactnnnnnnnnnnnnnnnnnnnctctataattggagggactaaaatcatagttaatccttttattaaccacaaattt |
319 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35350847 |
tctaaacagaaaaagttatatggactaaaaagtaaaaccaaaaaactctataattggagggactaaaatcatagttaatccttttattaaccacaaattt |
35350946 |
T |
|
| Q |
320 |
ggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacacttgacaattgtggttaatgaagttattaatgagttttgaaacaatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35350947 |
ggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacacttgacaattgtggttaatgaagttattaatgagtttcgaaacaatg |
35351046 |
T |
|
| Q |
420 |
tatattctttaacaatatattggaatcacgttaaccacatagaaagttgttgcaag-gttgtctaaaatgatttgttaaagaattatttctcatttggat |
518 |
Q |
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| T |
35351047 |
tatattctttaacaatatattggaatcacgttaaccacatagaaagttgttgcaaaagttgtctaaaatgatttgttaaagaattatttctcatttggat |
35351146 |
T |
|
| Q |
519 |
tttggtgtgatacaactcatttgatgaaactgcttttacaacttgaagaatttaagattccaggtcccaaatgatgttgtgaagggagtataaattaaag |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351147 |
tttggtgtgatacaactcatttgatgaaactgcttttacaacttgaagaatttaagattccaggtcccaaatgatgttgtgaagggagtataaattaaag |
35351246 |
T |
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| Q |
619 |
aataatgacatcttaagttggatatgggttgtgggtaatgcacgaaagaaagagttagaggaaagaaagtgagagaagtggtagatgatg |
708 |
Q |
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| T |
35351247 |
aataatgacatcttaagttggatatgggttgtgggtaatgcacgaaagaaagagttagaggaaagaaagtgagagaagtggtagatgatg |
35351336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 339 - 377
Target Start/End: Original strand, 2932222 - 2932260
Alignment:
| Q |
339 |
ttttcaggtgttcaaatctacatgtagttaaacacttga |
377 |
Q |
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| T |
2932222 |
ttttcaggtgttcaaatctacatgtatttgaacacttga |
2932260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 22159578 - 22159516
Alignment:
| Q |
59 |
ggttttagtctcgataagttttttgtttgggttcagtcactgcaaattcagaaattgttgctt |
121 |
Q |
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|||||||||| | |||||| ||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
22159578 |
ggttttagtccctctaagttatttgtttggtttcagtccctgcaaattcaaaaattgttgctt |
22159516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 22218286 - 22218224
Alignment:
| Q |
59 |
ggttttagtctcgataagttttttgtttgggttcagtcactgcaaattcagaaattgttgctt |
121 |
Q |
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|||||||||| | |||||| ||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
22218286 |
ggttttagtccctctaagttatttgtttggtttcagtccctgcaaattcaaaaattgttgctt |
22218224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 27670283 - 27670343
Alignment:
| Q |
312 |
acaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacac |
373 |
Q |
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| T |
27670283 |
acaaatttggacgcgattaacta-aaattttcatgtgttcaaatctacatgtagttgaacac |
27670343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 39022901 - 39022842
Alignment:
| Q |
62 |
tttagtctcgataagttttttgtttgggttcagtcactgcaaattcagaaattgttgctt |
121 |
Q |
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||||||| | |||||||||||| || | ||||||| |||||||||| ||||||||||||| |
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| T |
39022901 |
tttagtccctataagttttttgcttagattcagtccctgcaaattcggaaattgttgctt |
39022842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 390
Target Start/End: Original strand, 29136839 - 29136927
Alignment:
| Q |
301 |
ttttattaaccacaaatttggaggcgatcaaccacaaattttcaggtgttcaaatctacatgtagttaaacacttgacaattgtggttaa |
390 |
Q |
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| T |
29136839 |
tttttttaaccacaaatttatatgtgattaaccacaa-tttgaaggtgttcaaatctacatgtagttgaacatctgaaaattatggttaa |
29136927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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