View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_low_10 (Length: 410)
Name: NF13034_low_10
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 391
Target Start/End: Original strand, 38089123 - 38089499
Alignment:
| Q |
18 |
attattttaataaacttagagataggtcgcacg--ggttgacgagtatgatcccaatctccacctcaaaaacacctacgg-aaaactttctccctaatcc |
114 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | |
|
|
| T |
38089123 |
attattttaataaacttagggacaggtcgcacgcgggttgacgagtatgatcccaatctccacctcaaaaacacctacgggaaaactttctccctcatac |
38089222 |
T |
|
| Q |
115 |
gcatctccaatagaaaaactttcttctcgcgaggcttcaagtaggatatttctcaaatggactttcacttgcaagaacaaattgacatccttaattttgt |
214 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38089223 |
gcatctccacaagaaaaactctcttctcgcaaggcttcaagtgggatatttctcaaatggactttcacttgcaagtacaaattgacatccttaattttgt |
38089322 |
T |
|
| Q |
215 |
ctagtggttgctcgagatggttttcctcacatttctttgttatgtctgtattagtagatgtcatgggggcatattttgttaggcatcaatttatactgtg |
314 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089323 |
ctagtggttgctcgagagggtttgcctcacatttctttgttatgtctgtattagtagatgtcatgggggcatattttgttaggcatcaatttatactgtg |
38089422 |
T |
|
| Q |
315 |
atgataaatgctaaaagtgttttatgggtgtccttaatgggtatataaatgatgggttaggttgaatttgaggcctt |
391 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38089423 |
acgataaatgctaaaagtgttttatgggtgtccttaatgggtatataaatgatgggttaggttgaatttgaggcctt |
38089499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University