View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_12 (Length: 386)
Name: NF13034_low_12
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 376
Target Start/End: Complemental strand, 13966677 - 13966323
Alignment:
| Q |
22 |
ttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttatgaattccatcaacggcataatccaaaacttcat |
121 |
Q |
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| T |
13966677 |
ttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttatgaattccatcaacagcataatccaaaacttcat |
13966578 |
T |
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| Q |
122 |
cgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcacc |
221 |
Q |
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| T |
13966577 |
tgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgtgtttccgtaattcctcttctgttgcacc |
13966478 |
T |
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| Q |
222 |
caaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttctttgaattttattgattgacatagcatatca |
321 |
Q |
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| T |
13966477 |
caaagctcctttgatacgatttttcatgttgctgaatgacgctttttcaagagttttgtgacatgtttctttgaattttgttgattgacatagcatatca |
13966378 |
T |
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| Q |
322 |
acannnnnnngcgagttagagatatgtgctttttgttctccatcgccaccctttg |
376 |
Q |
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| T |
13966377 |
acatttttttgcgagttagagatatgtgctttttgttctccatcgccaccctttg |
13966323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 324
Target Start/End: Complemental strand, 13976845 - 13976543
Alignment:
| Q |
22 |
ttgatatcaaaagcatattcacttaggttatggaaatcaaattggtccaatgtgccaacagatttatgaattccatcaacggcataatccaaaacttcat |
121 |
Q |
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| T |
13976845 |
ttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaatgtaccaacagatttatgaattccatcaacggcataatccaaaacttcgt |
13976746 |
T |
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| Q |
122 |
cgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcacc |
221 |
Q |
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| T |
13976745 |
tgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttgataaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcact |
13976646 |
T |
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| Q |
222 |
caaagctcctttgatacgatttttcatgttggtgaatgacgctttttcaagagttttgtgacatgtttctttgaattttattgattgacatagcatatca |
321 |
Q |
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| T |
13976645 |
gaaagctgctttgataagctctttcgtgtcggttgatgacgcgttttcaagacttttgtgacatgtttctttgtattctgttgattgacatagcatatca |
13976546 |
T |
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| Q |
322 |
aca |
324 |
Q |
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||| |
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| T |
13976545 |
aca |
13976543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 13959073 - 13958912
Alignment:
| Q |
76 |
ccaacagatttatgaattccatcaacggcataatccaaaacttcatcgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttgataaa |
175 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||| ||||| | | ||||||||| || |
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| T |
13959073 |
ccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattcttgaataa |
13958974 |
T |
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| Q |
176 |
gtgctgaattgtttatgtgtttccgtaattcctctgctgttgcacccaaagctcctttgata |
237 |
Q |
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| | |||| |||||||||||||| ||| ||||||| |||||||| |||||| |||||||| |
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| T |
13958973 |
gagatgaactgtttatgtgtttcaataactcctctgatgttgcactgaaagctgctttgata |
13958912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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