View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_low_15 (Length: 364)
Name: NF13034_low_15
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 49029534 - 49029834
Alignment:
| Q |
8 |
caacagagatgtcttccatagtaagaggcatagtgataaggaacacatcaccagataatagactattaaaagggaacaagaatgatgttattgggagaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49029534 |
caacagagatgtcttccatagtaagaggcatagtgataaggaacacatcatcagataatagactattcaaagggaacaagaatgatgttattgggagaag |
49029633 |
T |
|
| Q |
108 |
aagtacaaaggtgcaatggaaggagttgaagttacgacttacatcaacatggaaagctagaagaacaagtacatatcagcctttaattcgtgcccaaact |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49029634 |
aagtacaaaggtgcagtggaaggagttgaagttacgacttacatcaacatggaaagctggaagaacaagtacatatcagcctttaattcgtgcccaaact |
49029733 |
T |
|
| Q |
208 |
atccttactcctacaacaccacccaccacaaaaaaggtacacttctatctagacctttatcttatctttttgtttttcgataattaattctctgggtttt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49029734 |
atccttactcctacaacaccacccaccacaaaaaaggtacacttctatctagacctttatcttatctttttgtttttcgataattaattctctgggtttt |
49029833 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
49029834 |
t |
49029834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University