View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13034_low_2 (Length: 634)
Name: NF13034_low_2
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Complemental strand, 34922803 - 34922189
Alignment:
| Q |
1 |
gcaaatttaggttagtcgagcttcccctagccaatggaaggttaggcgtaccttataaccacacgagagttagtcgatcctttcttgaatctactgaagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
34922803 |
gcaaatttaggttagtcgagcttcccctagccaatggaaggttaggcgtaccttataaccatacgagagttagtcgattctttcttgaatctaccgaagg |
34922704 |
T |
|
| Q |
101 |
gtatgtgagtcttgaagagatcaaactgagtcaaagctcaataaaactggacaacaagtcactaaacccacaccccctatttatagcaccactaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34922703 |
gtatgtgagtcttgaagagatcaaactgagtcaaagctcaataaaactggacaacaagtcactaaacccacaccccctatttatagcaccactaattgca |
34922604 |
T |
|
| Q |
201 |
aggagcaatgagtaaggatgcacattttgagaaagagacgcacacattggactttgccaatggaccatgccgtgaagtaagaagttgtctgt----cgaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |
|
|
| T |
34922603 |
aggagcaatgagtaaggatgcacattttgagaaagagacgcacacattggactttgccaatggaccatgccgtgaagtaggaagttgtctatcgaacgaa |
34922504 |
T |
|
| Q |
297 |
ggtgtggcaccacgaaccccctcgacgaagaaaataacgcattacccgctcagatagccgaacaatgctaaacactctaagtcatgtcatgttgacgagt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34922503 |
ggtgtggcaccacgaaccccctcgacgaagaaaataatgcattacccgctcagatagccgaacaatgataaacactctaagtcatgtcatgttgacgagt |
34922404 |
T |
|
| Q |
397 |
actaataggaatacattttttctataaatactcgttttgtacaatgtattcgacaaacaatcgatctaagaaagactacttgcactatatttctctttac |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |
|
|
| T |
34922403 |
actaataggaatacattttttctataaatactcattttgtacaatgtattcgacaaacaatcgatcaaagagagactacttgcattatatttctctttac |
34922304 |
T |
|
| Q |
497 |
cttttttcctttgtctttatttacatgcatttcctaatctagtaggnnnnnnnntctaaaacaagtgtactttaggaacacacagtttctttaagtacac |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34922303 |
cttttttcctttgtctttatttacatgcatttcctaatctagtagg-aaaaaaatctaaaacaagtgtactttaggaacacacagtttctttaagtacac |
34922205 |
T |
|
| Q |
597 |
gaacgatccacatccat |
613 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
34922204 |
g-acgatccacatccat |
34922189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 35892503 - 35892437
Alignment:
| Q |
69 |
gttagtcgatcctttcttgaatctactgaagggtatgtgagtcttgaagagatcaaactgagtcaaa |
135 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||| |||||||||| |||||||| ||||||| |
|
|
| T |
35892503 |
gttagtcgattctttcttgaatctactaaagaatatgtaggtcttgaagacatcaaacttagtcaaa |
35892437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 3219347 - 3219253
Alignment:
| Q |
102 |
tatgtgagtcttgaagagatcaaactgagtcaaagctcaataaaactggacaacaagtcactaaacccacaccccctatttatagcaccactaat |
196 |
Q |
| |
|
|||||||||||| |||| |||| | |||||||||||||||||| ||||||| ||||| ||||||| | ||||||||| ||| |||||||| |
|
|
| T |
3219347 |
tatgtgagtcttcaagacctcaagcaaagtcaaagctcaataaaattggacaatgagtcatataacccacgctccctatttaaagcgccactaat |
3219253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University