View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_22 (Length: 255)
Name: NF13034_low_22
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 413058 - 413293
Alignment:
| Q |
1 |
gtcattataatttgaggagtttaaaataagcagaaaggctattcttggcattatattttcacatgtgagcatcgtgattcaagcaagtctctttgatttc |
100 |
Q |
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| T |
413058 |
gtcattataatttgaggagttgaaaataaacagaaaggctattcttggcattatattttcacatgtgagcatcgcgattcaagcaagtctctttgatttc |
413157 |
T |
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| Q |
101 |
tctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctgatattactcaatagactagtatagtatccagtccttcatattccg |
200 |
Q |
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| T |
413158 |
tctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctgatattactcaatagac-----tagtatccagtccttcatattccg |
413252 |
T |
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| Q |
201 |
ccattgttttgtgcagtctataacgatagaaatatggtatatg |
243 |
Q |
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| T |
413253 |
ccattgttttgtgcagtc--taacgatagaaatatggtatatg |
413293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 7433085 - 7433242
Alignment:
| Q |
57 |
tttcacatgtgagcatcgtgattcaagcaagtctctttgatttctctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctga |
156 |
Q |
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| T |
7433085 |
tttcacatgtgagcatcgcgatt-aagtcagtctctttgatttctctaactcatttggaacaatttgtattcaggacatttctcatgtggaaaattctga |
7433183 |
T |
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| Q |
157 |
tattactcaatagactagtatagtatccagtccttcatattccgccattgttttgtgcagtcta |
220 |
Q |
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| T |
7433184 |
tattactcaatagac-----tagtatccagtccctcatattctgccactgttttgcgcggtcta |
7433242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 177
Target Start/End: Complemental strand, 11655495 - 11655375
Alignment:
| Q |
58 |
ttcacatgtgagcatcgtgattcaagcaagtctctttgatttc-tctaactcatttggaataatttgtattcatgacatttctcatgtggaaaattctga |
156 |
Q |
| |
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||||||| | ||||| |||||| ||||||||| |||||||||| | |||||||||| ||| ||| |||||||| ||||||||| ||| || | || ||| |
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| T |
11655495 |
ttcacatcttagcattgtgattaaagcaagtcgctttgatttcctttaactcattttgaacaatctgtattcaggacatttcttatgcgggagatattga |
11655396 |
T |
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| Q |
157 |
tattactcaatagactagtat |
177 |
Q |
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||||||| ||||||||||||| |
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| T |
11655395 |
tattacttaatagactagtat |
11655375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 11655761 - 11655715
Alignment:
| Q |
1 |
gtcattataatttgaggagtttaaaataagcagaaaggctattcttg |
47 |
Q |
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|||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
11655761 |
gtcattgtaatttcaggagttgaaaataagcagaaaggctattcttg |
11655715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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