View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_25 (Length: 228)
Name: NF13034_low_25
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_25 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 36689319 - 36689510
Alignment:
| Q |
23 |
tagcataagaaatgcaagttaagaagaaaagaaaaaatttcttcnnnnnnnnnnnnnn---gttgttgaaatatgaaacctcttaaatattaaaaacatc |
119 |
Q |
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| T |
36689319 |
tagcataagaaatgcaagttaagaagaaaagaaaaagtttcttcaaaaaaaaaaaaaaaaagttgttgaaatatgaaacctcttaaatattaaaaacatc |
36689418 |
T |
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| Q |
120 |
atcgtaccactgcaaaattgaacaagagagtgtgatgaatgaagcttagaaactcagagatatgagataagaatctcacaaaccaaccaaag |
211 |
Q |
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| T |
36689419 |
atcgtaccattgcaaaattgaacaagagagtgtgatgaatgaagcttagaaactcagagatatgagataagaatctcacaaaccaaccaaag |
36689510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 442052 - 442239
Alignment:
| Q |
23 |
tagcataagaaatgcaagttaagaagaaaagaaaaaatttcttcnnnnnnnnnnnnnngttgttgaaatatgaaacctcttaaatatt-aaaaacatcat |
121 |
Q |
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| T |
442052 |
tagcataagaaatgcaagttaagaagaaaagaaaaagtttcttcaaaaaaaaaaaa--gttgttgaaatatgaaacctcttaaatatttaaaaacatcat |
442149 |
T |
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| Q |
122 |
cgtaccactgcaaaattgaacaagagagtgtgatgaatgaagcttagaaactcagagatatgagataagaatctcacaaaccaaccaaag |
211 |
Q |
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| T |
442150 |
cgtacctttggaaaattgaacaagagagtgtgatgaatgaagcttagaaactcagagatatgagataagaatctcacaaaccaaccaaag |
442239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 404300 - 404432
Alignment:
| Q |
81 |
gttgttgaaatatgaaacctctta--aatattaaaaacatcatcgtaccactgcaaaattgaacaagagagt----gtgatgaatgaagcttagaaactc |
174 |
Q |
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| T |
404300 |
gttgttgaaatgtgaaacctcttataaatattacaaacatcatcgtacctttgcaacaatgaacaagagagtgtgagtgatgaataaatcttagaaactc |
404399 |
T |
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| Q |
175 |
agagatatgagataagaatctcacaaaccaacca |
208 |
Q |
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| T |
404400 |
aga-atgtgagacaagaatctcacaaacccacca |
404432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 429301 - 429433
Alignment:
| Q |
81 |
gttgttgaaatatgaaacctctta--aatattaaaaacatcatcgtaccactgcaaaattgaacaagagagt----gtgatgaatgaagcttagaaactc |
174 |
Q |
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| T |
429301 |
gttgttgaaatgtgaaacctcttataaatattacaaacatcatcgtacctttgcaacaatgaacaagagagtgtgagtgatgaataaatcttagaaactc |
429400 |
T |
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| Q |
175 |
agagatatgagataagaatctcacaaaccaacca |
208 |
Q |
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| T |
429401 |
aga-atgtgagacaagaatctcacaaacccacca |
429433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 1249 - 1117
Alignment:
| Q |
81 |
gttgttgaaatatgaaacctctta--aatattaaaaacatcatcgtaccactgcaaaattgaacaagagagt----gtgatgaatgaagcttagaaactc |
174 |
Q |
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||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||| | ||||||||||||| ||||||||| || ||||||||||| |
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| T |
1249 |
gttgttgaaatgtgaaacctcttataaatattacaaacatcatcgtacctttgcaacaatgaacaagagagtgtgagtgatgaataaatcttagaaactc |
1150 |
T |
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| Q |
175 |
agagatatgagataagaatctcacaaaccaacca |
208 |
Q |
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| T |
1149 |
aga-atgtgagacaagaatctcacaaacccacca |
1117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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