View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13034_low_26 (Length: 226)

Name: NF13034_low_26
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13034_low_26
NF13034_low_26
[»] chr6 (4 HSPs)
chr6 (29-210)||(6369578-6369755)
chr6 (1-29)||(7638634-7638662)
chr6 (1-29)||(13353213-13353241)
chr6 (1-29)||(33796338-33796366)
[»] scaffold0519 (2 HSPs)
scaffold0519 (1-29)||(1928-1956)
scaffold0519 (1-29)||(2163-2191)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-29)||(67497-67525)
[»] chr8 (3 HSPs)
chr8 (1-29)||(6559493-6559521)
chr8 (1-29)||(11232238-11232266)
chr8 (1-29)||(11232473-11232501)
[»] chr7 (6 HSPs)
chr7 (1-29)||(1000561-1000589)
chr7 (1-29)||(1596840-1596868)
chr7 (1-29)||(21861541-21861569)
chr7 (1-29)||(29469617-29469645)
chr7 (1-29)||(29469852-29469880)
chr7 (1-29)||(40898759-40898787)
[»] chr4 (1 HSPs)
chr4 (1-29)||(31254451-31254479)
[»] chr1 (3 HSPs)
chr1 (1-29)||(369647-369675)
chr1 (1-29)||(4098446-4098474)
chr1 (1-29)||(25460738-25460766)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 6369578 - 6369755
Alignment:
Q  29 atgtcaaataacatttgtagtgttaagtgtgccccataaaaattcacacatgctcacaaaatgttgaaacttttgtgattttgtaggaaagtatacaaat 128  Q
    |||||||||||||||||||||    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6369578 atgtcaaataacatttgtagt----agtgtgcctcataaaaattcacacatactcacaaaatgttgaaacttttgtgattttgtaggaaagtatacaaat 6369673  T
Q  129 gttcaagagaaggtgacatagtgagttgttgcttcaacaatctcttgaatgataaaagtccaaaaccattcaatctaaaaga 210  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  6369674 gttcaagagaaggtgacatagtgagttgttgcttcaataatctcttgaatgacaaaagtccaaaaccattcaatctaaaaga 6369755  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 7638662 - 7638634
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  7638662 tataagtgggggcaatcctcaccttacaa 7638634  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13353213 - 13353241
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  13353213 tataagtgggggcaatcctcaccttacaa 13353241  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33796338 - 33796366
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  33796338 tataagtgggggcaatcctcaccttacaa 33796366  T

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Target: scaffold0519 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1928 - 1956
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  1928 tataagtgggggcaatcctcaccttacaa 1956  T

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Target: scaffold0519; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2163 - 2191
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  2163 tataagtgggggcaatcctcaccttacaa 2191  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 67497 - 67525
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  67497 tataagtgggggcaatcctcaccttacaa 67525  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6559521 - 6559493
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  6559521 tataagtgggggcaatcctcaccttacaa 6559493  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11232266 - 11232238
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  11232266 tataagtgggggcaatcctcaccttacaa 11232238  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11232501 - 11232473
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  11232501 tataagtgggggcaatcctcaccttacaa 11232473  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1000561 - 1000589
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  1000561 tataagtgggggcaatcctcaccttacaa 1000589  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1596840 - 1596868
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  1596840 tataagtgggggcaatcctcaccttacaa 1596868  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21861541 - 21861569
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  21861541 tataagtgggggcaatcctcaccttacaa 21861569  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29469617 - 29469645
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  29469617 tataagtgggggcaatcctcaccttacaa 29469645  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29469852 - 29469880
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  29469852 tataagtgggggcaatcctcaccttacaa 29469880  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40898787 - 40898759
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  40898787 tataagtgggggcaatcctcaccttacaa 40898759  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31254479 - 31254451
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  31254479 tataagtgggggcaatcctcaccttacaa 31254451  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 369647 - 369675
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  369647 tataagtgggggcaatcctcaccttacaa 369675  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4098474 - 4098446
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  4098474 tataagtgggggcaatcctcaccttacaa 4098446  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25460766 - 25460738
Alignment:
Q  1 tataagtgggggcaatcctcaccttacaa 29  Q
    |||||||||||||||||||||||||||||    
T  25460766 tataagtgggggcaatcctcaccttacaa 25460738  T

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