View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_27 (Length: 217)
Name: NF13034_low_27
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 23705408 - 23705250
Alignment:
| Q |
1 |
gaatgttgaagcaatagtaaagaattggtaacaaaaacacaataacgatatgatcatgatcatcgattatagagatacataccagcaggaagaaaatcgt |
100 |
Q |
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| T |
23705408 |
gaatgttgaagcaatagtaaagaattggtaacaaaaacacaataacgatataatcatgatcatcgattatagagatacataacagcaggaagaaaatcgt |
23705309 |
T |
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| Q |
101 |
tttgcaaattggaagccatgatggaaggaaatttagattgtaaacccttgaattttaaa |
159 |
Q |
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| T |
23705308 |
tttgcaaattggaagccatgatggaaggaaatttagattgtaaacccttgaattttaaa |
23705250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 23653412 - 23653519
Alignment:
| Q |
74 |
gatacataccagcaggaagaaaatcgttttgcaaattggaagccatgatggaaggaaatttagattgtaaacccttgaattttaaagagctataataatc |
173 |
Q |
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| T |
23653412 |
gatacataccagcaggaagaaaatcgttttgcaaattggaagccatgagcgaagaaagtttagattttaaacccttg-attttaaagagcgataataat- |
23653509 |
T |
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| Q |
174 |
aagagttttg |
183 |
Q |
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| T |
23653510 |
aagagttttg |
23653519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 23738846 - 23738914
Alignment:
| Q |
59 |
atcatcgattatagagatacataccagcaggaagaaaatcgttttgcaaattggaagccatgatggaag |
127 |
Q |
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| T |
23738846 |
atcatcgattatagagatgcataccagcaggaagaaaatcgttttgcaaattgggagccatgatggaag |
23738914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 23705249 - 23705212
Alignment:
| Q |
180 |
tttgttgtgtgttttggtttttagagagaaagcgagaa |
217 |
Q |
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| T |
23705249 |
tttgttgtgtgttttggtttttagagagaaagcgagaa |
23705212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 29311649 - 29311586
Alignment:
| Q |
53 |
atcatgatcatcgattatagagatacataccagcaggaagaaaatcgttttgcaaattggaagccatga |
121 |
Q |
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| T |
29311649 |
atcatcatcatcgattataga--tacataccagca---agaaaatccttttgcaaattggaagccatga |
29311586 |
T |
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