View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_3 (Length: 594)
Name: NF13034_low_3
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 40 - 579
Target Start/End: Complemental strand, 53309537 - 53308982
Alignment:
| Q |
40 |
acaagaatacgatctgaagtattatagtaacgtaaaattttcaactatttatatatggcatgannnnnnnnnnnnnnnnacaggaattatatggcatgat |
139 |
Q |
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| T |
53309537 |
acaagaatacaatctgaagtattatagtaacgtaaaattttcaactatttatat--ggcatgatttttttattttttttacaggaattatatggcatgat |
53309440 |
T |
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| Q |
140 |
tgacaactgattatatagtttttcatttagaagctatctttttctcaagca--------------aattaaatagctcataataattaattaaggaagag |
225 |
Q |
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| T |
53309439 |
tgacaactgattatatagtttttcatttagaagctatatttttctcaagcatttataaacaagcaaattaaatagctcataataattaattaaggaagag |
53309340 |
T |
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| Q |
226 |
agaaatttatata----attgagagatgaacaagatcgatgcttacttccaggtaagatcaccagcaagaagaagatcattctccatgtcttcataggca |
321 |
Q |
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| T |
53309339 |
agaaatttatatatataattgagagatgaacaagatcgatgcttacttccaggtaagatcaccagcaagaagaagatcattctccatgtcttcataggca |
53309240 |
T |
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| Q |
322 |
ataacatgaccaggaatggcattagaaagatcaagatgatgatcaccggcgtcgcagtcatccgtgcaatcgacaaacatctggcggagagccttggcca |
421 |
Q |
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| T |
53309239 |
ataacatgaccaggaatggcattagaaagatcaagatgatgatcaccggcgtcgcagtcatccgtgcaatcgacaaacatctggcggagagccttggcca |
53309140 |
T |
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| Q |
422 |
gactttggtagctaccgtggttgtgaaggctgatgcgttggcagatcgaacggccctccaacacaactgtcacagcaggaactacactactagagacaag |
521 |
Q |
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| T |
53309139 |
gactttggtagctaccgtggttgtgaaggctgatgcgttggcagatcgaacggccctccaacacaactgtcacagcaggaactacactactagagacaag |
53309040 |
T |
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| Q |
522 |
atcatcatccagctcaagcccatgtgagagtgtttgaagtttgttgtacttggttttt |
579 |
Q |
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| T |
53309039 |
atcatcatccagctcaagcccatgtgagagtgtttgaagtttgttgtacttggttttt |
53308982 |
T |
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