View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13034_low_4 (Length: 575)
Name: NF13034_low_4
Description: NF13034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13034_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Complemental strand, 4372219 - 4371674
Alignment:
| Q |
15 |
cacagacaaattagggaggaggaatccagaatacatttcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgat |
114 |
Q |
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||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372219 |
cacagacaaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgat |
4372120 |
T |
|
| Q |
115 |
tacatgagaagcttccgtgataggttcacagattatttgggcaatgttatcatagtaagtttcaccaacttggtcttcaattttggggttacttgataat |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372119 |
tatatgagaagcttccgtgataggttcacagattatttgggcaatgttatcatagtaagtttcaccaacttggtcttcaattttggggttacttgataat |
4372020 |
T |
|
| Q |
215 |
taagaatttaatatacttggctatgatttttagatagcagtcagtgtaatcttatcttataaagtacattttctgccgtacattaatttgttcaaaattt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4372019 |
taagaatttaatatacttggctatgatttttagatagcagtcagtgtaatcttatcttataaagtacattttctgccgtacattaatttgttcaaaattt |
4371920 |
T |
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| Q |
315 |
tattgaagactatcgtctgcctccaagatattaatttgagagatattcgtttgacaaaataatgnnnnnnnntacattcaatttgtcatattaaggatag |
414 |
Q |
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| T |
4371919 |
tattgaagactatcgtctgcctccaagatattaatttgagagatattcgtttgacaaaataatg-aaaaaaatacattcaatttgtcatattaaggatag |
4371821 |
T |
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| Q |
415 |
ttgcaagaggaatgcttgttggggacacttgtgattgatgatagactaagacttgatgcatatttggtcatgtataaagttctaatcaaaaccaaattca |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4371820 |
ttgcaagaggaatgcttgttggggacacttgtgattgatgatagactaagacttgatgcatatttggtcatgtataaagttctaatcaaaaccaaattca |
4371721 |
T |
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| Q |
515 |
tttgcaggaaattcaagtgggacttggtccatgtggggagttgagat |
561 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4371720 |
tttgcaggaaattcaagtgggacttggtccatgtggggagttgagat |
4371674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 4364627 - 4364468
Alignment:
| Q |
15 |
cacagacaaattagggaggaggaatccagaatacatttcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgat |
114 |
Q |
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||||||||||||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364627 |
cacagacaaattaggaagaagaaatccagaatacatctcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgat |
4364528 |
T |
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| Q |
115 |
tacatgagaagcttccgtgataggttcacagattatttgggcaatgttatcatagtaagt |
174 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364527 |
tatatgagaagcttccgtgataggttcacagattatttgggcaatgttatcatagtaagt |
4364468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 443 - 561
Target Start/End: Complemental strand, 4364123 - 4364005
Alignment:
| Q |
443 |
ttgtgattgatgatagactaagacttgatgcatatttggtcatgtataaagttctaatcaaaaccaaattcatttgcaggaaattcaagtgggacttggt |
542 |
Q |
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||||||||||||| | |||| |||||||||||||| | | ||||||||| ||||||| || | ||||||||||||||||||||||||||||| || ||| |
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| T |
4364123 |
ttgtgattgatgaaaaactatgacttgatgcatatattgcaatgtataaaattctaattaagaacaaattcatttgcaggaaattcaagtggggctaggt |
4364024 |
T |
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| Q |
543 |
ccatgtggggagttgagat |
561 |
Q |
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||||||||||||||||||| |
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| T |
4364023 |
ccatgtggggagttgagat |
4364005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 41042927 - 41043069
Alignment:
| Q |
15 |
cacagacaaattagggaggaggaatccagaatacatttcattgggatgtgattcagtgcctgttctagcaggaagaactccacttcaagtctactccgat |
114 |
Q |
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|||||||| || ||||||||| ||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||| || | || |
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| T |
41042927 |
cacagacagatcagggaggagaaatcctgagtacatatcattgggatgtgattcagtgcctgttctaaaaggaagaactcccctccaagtgtatgctgac |
41043026 |
T |
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| Q |
115 |
tacatgagaagcttccgtgataggttcacagattatttgggca |
157 |
Q |
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|||||||| ||||| ||||| || |||| ||||| ||||||| |
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| T |
41043027 |
tacatgaggagctttcgtgacagattcagtgattacttgggca |
41043069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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